Literature DB >> 31570896

The genomic landscape of metastatic breast cancer highlights changes in mutation and signature frequencies.

Lindsay Angus1, Marcel Smid1, Saskia M Wilting1, Job van Riet1,2,3, Arne Van Hoeck4, Luan Nguyen4, Serena Nik-Zainal5, Tessa G Steenbruggen6, Vivianne C G Tjan-Heijnen7, Mariette Labots8, Johanna M G H van Riel9, Haiko J Bloemendal10,11, Neeltje Steeghs6,11, Martijn P Lolkema1,11, Emile E Voest6,11, Harmen J G van de Werken2,3, Agnes Jager1, Edwin Cuppen4,12, Stefan Sleijfer1,11, John W M Martens13,14.   

Abstract

The whole-genome sequencing of prospectively collected tissue biopsies from 442 patients with metastatic breast cancer reveals that, compared to primary breast cancer, tumor mutational burden doubles, the relative contributions of mutational signatures shift and the mutation frequency of six known driver genes increases in metastatic breast cancer. Significant associations with pretreatment are also observed. The contribution of mutational signature 17 is significantly enriched in patients pretreated with fluorouracil, taxanes, platinum and/or eribulin, whereas the de novo mutational signature I identified in this study is significantly associated with pretreatment containing platinum-based chemotherapy. Clinically relevant subgroups of tumors are identified, exhibiting either homologous recombination deficiency (13%), high tumor mutational burden (11%) or specific alterations (24%) linked to sensitivity to FDA-approved drugs. This study provides insights into the biology of metastatic breast cancer and identifies clinically useful genomic features for the future improvement of patient management.

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Year:  2019        PMID: 31570896      PMCID: PMC6858873          DOI: 10.1038/s41588-019-0507-7

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  2 in total

1.  Mutation Profiling of Key Cancer Genes in Primary Breast Cancers and Their Distant Metastases.

Authors:  Willemijne A M E Schrijver; Pier Selenica; Ju Youn Lee; Charlotte K Y Ng; Kathleen A Burke; Salvatore Piscuoglio; Samuel H Berman; Jorge S Reis-Filho; Britta Weigelt; Paul J van Diest; Cathy B Moelans
Journal:  Cancer Res       Date:  2018-04-03       Impact factor: 12.701

2.  The UCSC Genome Browser database: 2018 update.

Authors:  Jonathan Casper; Ann S Zweig; Chris Villarreal; Cath Tyner; Matthew L Speir; Kate R Rosenbloom; Brian J Raney; Christopher M Lee; Brian T Lee; Donna Karolchik; Angie S Hinrichs; Maximilian Haeussler; Luvina Guruvadoo; Jairo Navarro Gonzalez; David Gibson; Ian T Fiddes; Christopher Eisenhart; Mark Diekhans; Hiram Clawson; Galt P Barber; Joel Armstrong; David Haussler; Robert M Kuhn; W James Kent
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

  2 in total
  89 in total

Review 1.  The Multifaceted Nature of Tumor Microenvironment in Breast Carcinomas.

Authors:  Laura Annaratone; Eliano Cascardi; Elena Vissio; Ivana Sarotto; Ewa Chmielik; Anna Sapino; Enrico Berrino; Caterina Marchiò
Journal:  Pathobiology       Date:  2020-04-23       Impact factor: 4.342

Review 2.  Clinical cancer genomic profiling.

Authors:  Debyani Chakravarty; David B Solit
Journal:  Nat Rev Genet       Date:  2021-03-24       Impact factor: 53.242

Review 3.  Clinical application of circulating tumor DNA in breast cancer.

Authors:  Jeffrey Chun Hin Chan; James Chung Hang Chow; Connie Hoi Man Ho; Therese Yue Man Tsui; William C Cho
Journal:  J Cancer Res Clin Oncol       Date:  2021-03-24       Impact factor: 4.553

Review 4.  Artificial intelligence radiogenomics for advancing precision and effectiveness in oncologic care (Review).

Authors:  Eleftherios Trivizakis; Georgios Z Papadakis; Ioannis Souglakos; Nikolaos Papanikolaou; Lefteris Koumakis; Demetrios A Spandidos; Aristidis Tsatsakis; Apostolos H Karantanas; Kostas Marias
Journal:  Int J Oncol       Date:  2020-05-11       Impact factor: 5.650

5.  Opportunities and Challenges for Analyzing Cancer Data at the Inter- and Intra-Institutional Levels.

Authors:  Julie Wu; Jordan Bryan; Samuel M Rubinstein; Lucy Wang; Michele Lenoue-Newton; Raed Zuhour; Mia Levy; Christine Micheel; Yaomin Xu; Suresh K Bhavnani; Lester Mackey; Jeremy L Warner
Journal:  JCO Precis Oncol       Date:  2020-06-25

Review 6.  A systems biology approach to discovering pathway signaling dysregulation in metastasis.

Authors:  Robert Clarke; Pavel Kraikivski; Brandon C Jones; Catherine M Sevigny; Surojeet Sengupta; Yue Wang
Journal:  Cancer Metastasis Rev       Date:  2020-08-10       Impact factor: 9.264

Review 7.  Breast Cancer: A Molecularly Heterogenous Disease Needing Subtype-Specific Treatments.

Authors:  Ugo Testa; Germana Castelli; Elvira Pelosi
Journal:  Med Sci (Basel)       Date:  2020-03-23

Review 8.  Intra-Arterial Therapies for Liver Metastatic Breast Cancer: A Systematic Review and Meta-Analysis.

Authors:  B M Aarts; F M Gómez Muñoz; H Wildiers; V O Dezentjé; T R Baetens; W Schats; M Lopez-Yurda; R C Dresen; B J de Wit-van der Veen; C M Deroose; G Maleux; R G H Beets-Tan; E G Klompenhouwer
Journal:  Cardiovasc Intervent Radiol       Date:  2021-07-28       Impact factor: 2.740

9.  The genomic landscape of 85 advanced neuroendocrine neoplasms reveals subtype-heterogeneity and potential therapeutic targets.

Authors:  Job van Riet; Harmen J G van de Werken; Edwin Cuppen; Ferry A L M Eskens; Margot Tesselaar; Linde M van Veenendaal; Heinz-Josef Klümpen; Marcus W Dercksen; Gerlof D Valk; Martijn P Lolkema; Stefan Sleijfer; Bianca Mostert
Journal:  Nat Commun       Date:  2021-07-29       Impact factor: 14.919

10.  The effects of luminal and trans-endothelial fluid flows on the extravasation and tissue invasion of tumor cells in a 3D in vitro microvascular platform.

Authors:  Cynthia Hajal; Lina Ibrahim; Jean Carlos Serrano; Giovanni S Offeddu; Roger D Kamm
Journal:  Biomaterials       Date:  2020-10-19       Impact factor: 12.479

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