Literature DB >> 32392456

Ecology, Structure, and Evolution of Shigella Phages.

Sundharraman Subramanian1, Kristin N Parent1, Sarah M Doore1,2.   

Abstract

Numerous bacteriophages-viruses of bacteria, also known as phages-have been described for hundreds of bacterial species. The Gram-negative Shigella species are close relatives of Escherichia coli, yet relatively few previously described phages appear to exclusively infect this genus. Recent efforts to isolate Shigella phages have indicated these viruses are surprisingly abundant in the environment and have distinct genomic and structural properties. In addition, at least one model system used for experimental evolution studies has revealed a unique mechanism for developing faster infection cycles. Differences between these bacteriophages and other well-described model systems may mirror differences between their hosts' ecology and defense mechanisms. In this review, we discuss the history of Shigella phages and recent developments in their isolation and characterization and the structural information available for three model systems, Sf6, Sf14, and HRP29; we also provide an overview of potential selective pressures guiding both Shigella phage and host evolution.

Entities:  

Keywords:  Omps; Shigella; lipopolysaccharide; myoviruses; phage biology; podoviruses

Mesh:

Substances:

Year:  2020        PMID: 32392456      PMCID: PMC7670969          DOI: 10.1146/annurev-virology-010320-052547

Source DB:  PubMed          Journal:  Annu Rev Virol        ISSN: 2327-056X            Impact factor:   10.431


  110 in total

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Authors:  G E Allison; N K Verma
Journal:  Trends Microbiol       Date:  2000-01       Impact factor: 17.079

2.  Structures of the phage Sf6 large terminase provide new insights into DNA translocation and cleavage.

Authors:  Haiyan Zhao; Theodore E Christensen; Yvonne N Kamau; Liang Tang
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-29       Impact factor: 11.205

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Journal:  J Med Microbiol       Date:  1997-11       Impact factor: 2.472

4.  Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics.

Authors:  G M Pupo; R Lan; P R Reeves
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-12       Impact factor: 11.205

5.  Diversity of CRISPR loci in Escherichia coli.

Authors:  C Díez-Villaseñor; C Almendros; J García-Martínez; F J M Mojica
Journal:  Microbiology       Date:  2010-02-04       Impact factor: 2.777

6.  Structural remodeling of bacteriophage T4 and host membranes during infection initiation.

Authors:  Bo Hu; William Margolin; Ian J Molineux; Jun Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-17       Impact factor: 11.205

7.  The genomes, proteomes, and structures of three novel phages that infect the Bacillus cereus group and carry putative virulence factors.

Authors:  Julianne H Grose; David M Belnap; Jordan D Jensen; Andrew D Mathis; John T Prince; Bryan D Merrill; Sandra H Burnett; Donald P Breakwell
Journal:  J Virol       Date:  2014-08-06       Impact factor: 5.103

8.  A Shigella boydii bacteriophage which resembles Salmonella phage ViI.

Authors:  Hany Anany; Erika J Lingohr; Andre Villegas; Hans-Wolfgang Ackermann; Yi-Min She; Mansel W Griffiths; Andrew M Kropinski
Journal:  Virol J       Date:  2011-05-19       Impact factor: 4.099

9.  Combining Shigella Tn-seq data with gold-standard E. coli gene deletion data suggests rare transitions between essential and non-essential gene functionality.

Authors:  Nikki E Freed; Dirk Bumann; Olin K Silander
Journal:  BMC Microbiol       Date:  2016-09-06       Impact factor: 3.605

10.  Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri.

Authors:  Thomas R Connor; Clare R Barker; Kate S Baker; François-Xavier Weill; Kaisar Ali Talukder; Anthony M Smith; Stephen Baker; Malika Gouali; Duy Pham Thanh; Ishrat Jahan Azmi; Wanderley Dias da Silveira; Torsten Semmler; Lothar H Wieler; Claire Jenkins; Alejandro Cravioto; Shah M Faruque; Julian Parkhill; Dong Wook Kim; Karen H Keddy; Nicholas R Thomson
Journal:  Elife       Date:  2015-08-04       Impact factor: 8.140

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  3 in total

1.  Large metabolic rewiring from small genomic changes between strains of Shigella flexneri.

Authors:  Sarah M Doore; Sundharraman Subramanian; Nicholas M Tefft; Renato Morona; Michaela A TerAvest; Kristin N Parent
Journal:  J Bacteriol       Date:  2021-03-22       Impact factor: 3.490

2.  Host Range Expansion of Shigella Phage Sf6 Evolves through Point Mutations in the Tailspike.

Authors:  Sundharraman Subramanian; John A Dover; Kristin N Parent; Sarah M Doore
Journal:  J Virol       Date:  2022-07-27       Impact factor: 6.549

3.  Morphological, biological, and genomic characterization of a newly isolated lytic phage Sfk20 infecting Shigella flexneri, Shigella sonnei, and Shigella dysenteriae1.

Authors:  Bani Mallick; Payel Mondal; Moumita Dutta
Journal:  Sci Rep       Date:  2021-09-29       Impact factor: 4.379

  3 in total

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