Literature DB >> 31561100

Deep learning based retinal OCT segmentation.

M Pekala1, N Joshi1, T Y Alvin Liu2, N M Bressler2, D Cabrera DeBuc3, P Burlina4.   

Abstract

We look at the recent application of deep learning (DL) methods in automated fine-grained segmentation of spectral domain optical coherence tomography (OCT) images of the retina. We describe a new method combining fully convolutional networks (FCN) with Gaussian Processes for post processing. We report performance comparisons between the proposed approach, human clinicians, and other machine learning (ML) such as graph based approaches. The approach is demonstrated on an OCT dataset consisting of mild non-proliferative diabetic retinopathy from the University of Miami. The method is shown to have performance on par with humans, also compares favorably with the other ML methods, and appears to have as small or smaller mean unsigned error (equal to 1.06), versus errors ranging from 1.17 to 1.81 for other methods, and compared with human error of 1.10.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Fully convolutional networks; Gaussian process regression; Neurodegenerative; OCT segmentation; Retinal and vascular diseases

Year:  2019        PMID: 31561100     DOI: 10.1016/j.compbiomed.2019.103445

Source DB:  PubMed          Journal:  Comput Biol Med        ISSN: 0010-4825            Impact factor:   4.589


  19 in total

1.  Correction propagation for user-assisted optical coherence tomography segmentation: general framework and application to Bruch's membrane segmentation.

Authors:  Daniel Stromer; Eric M Moult; Siyu Chen; Nadia K Waheed; Andreas Maier; James G Fujimoto
Journal:  Biomed Opt Express       Date:  2020-04-30       Impact factor: 3.732

2.  Deep convolutional neural network-based scatterer density and resolution estimators in optical coherence tomography.

Authors:  Thitiya Seesan; Ibrahim Abd El-Sadek; Pradipta Mukherjee; Lida Zhu; Kensuke Oikawa; Arata Miyazawa; Larina Tzu-Wei Shen; Satoshi Matsusaka; Prathan Buranasiri; Shuichi Makita; Yoshiaki Yasuno
Journal:  Biomed Opt Express       Date:  2021-12-07       Impact factor: 3.732

3.  Weakly supervised individual ganglion cell segmentation from adaptive optics OCT images for glaucomatous damage assessment.

Authors:  Somayyeh Soltanian-Zadeh; Kazuhiro Kurokawa; Zhuolin Liu; Furu Zhang; Osamah Saeedi; Daniel X Hammer; Donald T Miller; Sina Farsiu
Journal:  Optica       Date:  2021-05-04       Impact factor: 11.104

4.  Retinal layer segmentation in optical coherence tomography (OCT) using a 3D deep-convolutional regression network for patients with age-related macular degeneration.

Authors:  Souvick Mukherjee; Tharindu De Silva; Peyton Grisso; Henry Wiley; D L Keenan Tiarnan; Alisa T Thavikulwat; Emily Chew; Catherine Cukras
Journal:  Biomed Opt Express       Date:  2022-05-05       Impact factor: 3.562

5.  Application of Deep Learning for Automated Detection of Polypoidal Choroidal Vasculopathy in Spectral Domain Optical Coherence Tomography.

Authors:  Papis Wongchaisuwat; Ranida Thamphithak; Peerakarn Jitpukdee; Nida Wongchaisuwat
Journal:  Transl Vis Sci Technol       Date:  2022-10-03       Impact factor: 3.048

6.  Artificial intelligence-based strategies to identify patient populations and advance analysis in age-related macular degeneration clinical trials.

Authors:  Antonio Yaghy; Aaron Y Lee; Pearse A Keane; Tiarnan D L Keenan; Luisa S M Mendonca; Cecilia S Lee; Anne Marie Cairns; Joseph Carroll; Hao Chen; Julie Clark; Catherine A Cukras; Luis de Sisternes; Amitha Domalpally; Mary K Durbin; Kerry E Goetz; Felix Grassmann; Jonathan L Haines; Naoto Honda; Zhihong Jewel Hu; Christopher Mody; Luz D Orozco; Cynthia Owsley; Stephen Poor; Charles Reisman; Ramiro Ribeiro; Srinivas R Sadda; Sobha Sivaprasad; Giovanni Staurenghi; Daniel Sw Ting; Santa J Tumminia; Luca Zalunardo; Nadia K Waheed
Journal:  Exp Eye Res       Date:  2022-05-04       Impact factor: 3.770

7.  Retinal Boundary Segmentation in Stargardt Disease Optical Coherence Tomography Images Using Automated Deep Learning.

Authors:  Jason Kugelman; David Alonso-Caneiro; Yi Chen; Sukanya Arunachalam; Di Huang; Natasha Vallis; Michael J Collins; Fred K Chen
Journal:  Transl Vis Sci Technol       Date:  2020-10-13       Impact factor: 3.283

8.  DeepRetina: Layer Segmentation of Retina in OCT Images Using Deep Learning.

Authors:  Qiaoliang Li; Shiyu Li; Zhuoying He; Huimin Guan; Runmin Chen; Ying Xu; Tao Wang; Suwen Qi; Jun Mei; Wei Wang
Journal:  Transl Vis Sci Technol       Date:  2020-12-09       Impact factor: 3.283

9.  Precise higher-order reflectivity and morphology models for early diagnosis of diabetic retinopathy using OCT images.

Authors:  A Sharafeldeen; M Elsharkawy; F Khalifa; A Soliman; M Ghazal; M AlHalabi; M Yaghi; M Alrahmawy; S Elmougy; H S Sandhu; A El-Baz
Journal:  Sci Rep       Date:  2021-02-25       Impact factor: 4.379

10.  Pathological-Corneas Layer Segmentation and Thickness Measurement in OCT Images.

Authors:  Amr Elsawy; Giovanni Gregori; Taher Eleiwa; Mohamed Abdel-Mottaleb; Mohamed Abou Shousha
Journal:  Transl Vis Sci Technol       Date:  2020-10-21       Impact factor: 3.283

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