Literature DB >> 31559827

A call to adopt a "fit for purpose" approach to antibody validation for flow cytometry analyses of stem cell models and beyond.

Matthew Waas1, Rebekah L Gundry1.   

Abstract

Human pluripotent stem cell-derived cardiomyocytes (hPSC-CMs) can be exploited as models for a wide range of research applications and numerous protocols for generating hPSC-CMs have been described. However, it is currently not possible to direct differentiation to a single, homogeneous end point, and the resulting heterogeneity may be variable among laboratories, cell lines, and protocols. Consequently, the ability to assess phenotypic heterogeneity of the cell population is critical to the interpretation, repeatability, and reproduction of hPSC-CM studies. While flow cytometry is well suited for this purpose, a review of published literature reveals there is currently no consensus regarding which marker, antibody, or protocol is best suited to enable comparisons of hPSC-CM culture heterogeneity. Moreover, the lack of available experimental detail, combined with the variability in the approaches used for hPSC-CM evaluation, makes it challenging to reproduce, interpret, and compare published data. Consequently, this article calls for an alignment of the way researchers approach the routine use and documentation of the antibodies and controls used during flow cytometry-based assessment of hPSC-CM cultures. We advocate for the adoption of a "fit for purpose" validation mindset, whereby antibodies and experimental conditions are demonstrated as specific within a defined experimental design and biological context. Overall, we expect that by adhering to rigorous standards for antibody validation and use, reporting of experimental details, and presentation of data, the concepts emphasized here will promote enhanced utility and dialogue regarding hPSC-CM for a variety of research and translational applications by enabling more accurate comparisons of results among studies.

Entities:  

Keywords:  antibody; cardiomyocytes; flow cytometry; stem cells; validation

Mesh:

Substances:

Year:  2019        PMID: 31559827      PMCID: PMC6879911          DOI: 10.1152/ajpheart.00347.2019

Source DB:  PubMed          Journal:  Am J Physiol Heart Circ Physiol        ISSN: 0363-6135            Impact factor:   4.733


  12 in total

Review 1.  Antibody validation.

Authors:  Jennifer Bordeaux; Allison Welsh; Seema Agarwal; Elizabeth Killiam; Maria Baquero; Jason Hanna; Valsamo Anagnostou; David Rimm
Journal:  Biotechniques       Date:  2010-03       Impact factor: 1.993

2.  Contribution of two-pore K+ channels to cardiac ventricular action potential revealed using human iPSC-derived cardiomyocytes.

Authors:  Sam Chai; Xiaoping Wan; Drew M Nassal; Haiyan Liu; Christine S Moravec; Angelina Ramirez-Navarro; Isabelle Deschênes
Journal:  Am J Physiol Heart Circ Physiol       Date:  2017-03-24       Impact factor: 4.733

3.  A proposal for validation of antibodies.

Authors:  Mathias Uhlen; Anita Bandrowski; Steven Carr; Aled Edwards; Jan Ellenberg; Emma Lundberg; David L Rimm; Henry Rodriguez; Tara Hiltke; Michael Snyder; Tadashi Yamamoto
Journal:  Nat Methods       Date:  2016-09-05       Impact factor: 28.547

4.  Spheroids of cardiomyocytes derived from human-induced pluripotent stem cells improve recovery from myocardial injury in mice.

Authors:  Saidulu Mattapally; Wuqiang Zhu; Vladimir G Fast; Ling Gao; Chelsea Worley; Ramaswamy Kannappan; Anton V Borovjagin; Jianyi Zhang
Journal:  Am J Physiol Heart Circ Physiol       Date:  2018-04-06       Impact factor: 4.733

Review 5.  Differentiation of Cardiomyocytes from Human Pluripotent Stem Cells Using Monolayer Culture.

Authors:  Ivan Batalov; Adam W Feinberg
Journal:  Biomark Insights       Date:  2015-05-27

Review 6.  Ten Basic Rules of Antibody Validation.

Authors:  Michael G Weller
Journal:  Anal Chem Insights       Date:  2018-02-08

7.  The challenges with the validation of research antibodies.

Authors:  Jan L A Voskuil
Journal:  F1000Res       Date:  2017-02-17

8.  Guidelines for authors and reviewers on antibody use in physiology studies.

Authors:  Heddwen L Brooks; Merry L Lindsey
Journal:  Am J Physiol Heart Circ Physiol       Date:  2018-01-05       Impact factor: 4.733

9.  Distinct iPS Cells Show Different Cardiac Differentiation Efficiency.

Authors:  Yohei Ohno; Shinsuke Yuasa; Toru Egashira; Tomohisa Seki; Hisayuki Hashimoto; Shugo Tohyama; Yuki Saito; Akira Kunitomi; Kenichiro Shimoji; Takeshi Onizuka; Toshimi Kageyama; Kojiro Yae; Tomofumi Tanaka; Ruri Kaneda; Fumiyuki Hattori; Mitsushige Murata; Kensuke Kimura; Keiichi Fukuda
Journal:  Stem Cells Int       Date:  2013-10-27       Impact factor: 5.443

10.  Are These Cardiomyocytes? Protocol Development Reveals Impact of Sample Preparation on the Accuracy of Identifying Cardiomyocytes by Flow Cytometry.

Authors:  Matthew Waas; Ranjuna Weerasekera; Erin M Kropp; Marisol Romero-Tejeda; Ellen N Poon; Kenneth R Boheler; Paul W Burridge; Rebekah L Gundry
Journal:  Stem Cell Reports       Date:  2019-01-24       Impact factor: 7.765

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  1 in total

1.  An American Physiological Society cross-journal Call for Papers on "Deconstructing Organs: Single-Cell Analyses, Decellularized Organs, Organoids, and Organ-on-a-Chip Models".

Authors:  Josephine C Adams; P Darwin Bell; Sue C Bodine; Heddwen L Brooks; Nigel Bunnett; Bina Joe; Kara Hansell Keehan; Thomas R Kleyman; André Marette; Rory E Morty; Jan-Marino Ramírez; Morten B Thomsen; Bill J Yates; Irving H Zucker
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2020-07-01       Impact factor: 5.464

  1 in total

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