| Literature DB >> 29351459 |
Heddwen L Brooks1, Merry L Lindsey2,3.
Abstract
Antibody use is a critical component of cardiovascular physiology research, and antibodies are used to monitor protein abundance (immunoblot analysis) and protein expression and localization (in tissue by immunohistochemistry and in cells by immunocytochemistry). With ongoing discussions on how to improve reproducibility and rigor, the goal of this review is to provide best practice guidelines regarding how to optimize antibody use for increased rigor and reproducibility in both immunoblot analysis and immunohistochemistry approaches. Listen to this article's corresponding podcast at http://ajpheart.podbean.com/e/guidelines-on-antibody-use-in-physiology-studies/ .Entities:
Keywords: antibody; immunoblot analysis; immunoblotting; immunohistochemistry; rigor and reproducibility
Mesh:
Substances:
Year: 2018 PMID: 29351459 PMCID: PMC6048465 DOI: 10.1152/ajpheart.00512.2017
Source DB: PubMed Journal: Am J Physiol Heart Circ Physiol ISSN: 0363-6135 Impact factor: 4.733
Fig. 1.Literature assessment of antibody (Ab) use in articles published in the American Journal of Physiology-Heart and Circulatory Physiology. A: Ab use in immunoblot experiments. B: Ab use in immunohistochemistry experiments. amt, amount; MW, molecular weight.
Antibody resources
| Site Name | Address | Information Provided |
|---|---|---|
| Antibodypedia ( | Portal for validated antibodies and antigens | |
| The Antibody Registry | Assigns unique and persistent identifiers to each antibody that can be referenced in publications | |
| Antibody Resource | Provides a list of search sites, a catalog of catalogs | |
| Antibody Review | Based on a Protein Knowledge Base called ProteinKB, a curated database containing 42,000 human, mouse, and rat proteins | |
| Biocompare Antibody Search Tool | Has an excellent video that discusses reproducibility issues | |
| CiteAb | Largest antibody search engine, ranks antibodies by citation number | |
| Linscott’s Directory of Immunological & Biological Reagents | Includes user reviews | |
| AHo’s Amazing Atlas of Antibody Anatomy | Has an “Antibodies for Beginners” section | |
| American Physiological Society | “Guidelines for authors and reviewers on antibody use in physiology studies” (this article) | Details controls to be performed and information to be recorded to increase reproducibility of antibody use in physiology research |
| Anatomic Pathology Checklist | Checklist used for inspection of laboratories by the Commission on Laboratory Accreditation of the College of American Pathologists | |
| Antibody Society | International forum for field of recombinant antibodies; has on-site tools for antibody informatics | |
| FASEB Enhancing Research Reproducibility | Section on research using antibodies provides recommendations | |
Note that sites for individual commercial resources are not listed here. FASEB, Federation of American Societies for Experimental Biology.
Fig. 2.Sample laboratory notebook page for recording immunoblot experiments. Ab, antibody; PVDF, polyvinylidene difluoride.
Recommendations for controls
| Control | Use | Type | Information Provided/Caveats | Priority |
|---|---|---|---|---|
| Known source tissue | IB/IHC | Positive | Antibody can recognize the antigen; easy and inexpensive control | High |
| Tissue or cells from null animal | IB/IHC | Negative | Evaluates nonspecific binding in the absence of the protein target | High |
| No primary antibody | IHC | Negative | Evaluates specificity of primary antibody binding to antigen; requires sufficient material; not needed for every sample | High |
| Reacting primary antibody with saturating amounts of antigen | IB/IHC | Negative | Absorption control to eliminate specific response; important control for untested antibody | Medium to low |
| Nonimmune serum from the same species as primary antibody | IB/IHC | Negative | Eliminates specific response | Low |
| No primary or secondary antibody | IHC | Negative | Evaluates label specificity for primary antibody; requires sufficient material; not needed for every sample | Low |
| Recombinant protein | IB | Positive | Antibody can recognize the antigen; high cost, especially for antibodies not routinely used | Low |
IB, immunoblot analysis; IHC, immunohistochemistry.
Guidelines: minimum details to be provided in description of methods and results
| Methods |
|
Tissue extraction: buffer reagent and protein quantification details Concentration of protein loaded for each protein of interest Gel: percentage SDS-PAGE and membrane type (nitrocellulose or polyvinylidene difluoride) Primary and secondary antibodies: name, source, lot number, dilution, incubation time, and temperature Label: type, source, incubation time, and exposure time Documentation or reference confirming antibody-antigen binding (positive and negative controls used): type, tissue source, and processing method |
| Results |
|
Molecular weight information Number of bands recognized Blot should include at least three biological replicates for each group Positive control for the antibody (e.g., protein extract of high-abundance tissue) |
| Methods |
|
Tissue fixation and processing details Primary and secondary antibodies: name, source, lot number, dilution, incubation time, and temperature Label: type, source, and incubation time Documentation or reference confirming antibody-antigen binding (positive and negative controls used): type, tissue source, and processing method |
| Results |
|
Representative images, including no primary and no secondary antibody negative controls Quantification, blinded |
Modified from Gilda et al. (14) and Hewitt et al. (18).