Literature DB >> 31548374

DDX5 helicase resolves G-quadruplex and is involved in MYC gene transcriptional activation.

Guanhui Wu1, Zheng Xing2, Elizabeth J Tran3,4, Danzhou Yang5,4,6.   

Abstract

G-quadruplexes (G4) are noncanonical secondary structures formed in guanine-rich DNA and RNA sequences. MYC, one of the most critical oncogenes, forms a DNA G4 in its proximal promoter region (MycG4) that functions as a transcriptional silencer. However, MycG4 is highly stable in vitro and its regulatory role would require active unfolding. Here we report that DDX5, one of the founding members of the DEAD-box RNA helicase family, is extremely proficient at unfolding MycG4-DNA. Our results show that DDX5 is a highly active G4-resolvase that does not require a single-stranded overhang and that ATP hydrolysis is not directly coupled to G4-unfolding of DDX5. The chromatin binding sites of DDX5 are G-rich sequences. In cancer cells, DDX5 is enriched at the MYC promoter and activates MYC transcription. The DDX5 interaction with the MYC promoter and DDX5-mediated MYC activation is inhibited by G4-interactive small molecules. Our results uncover a function of DDX5 in resolving DNA and RNA G4s and suggest a molecular target to suppress MYC for cancer intervention.

Entities:  

Keywords:  DDX5; G-quadruplex; G4-helicase; MYC; cancer drug target

Mesh:

Substances:

Year:  2019        PMID: 31548374      PMCID: PMC6789965          DOI: 10.1073/pnas.1909047116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  73 in total

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Journal:  J Pathol       Date:  1998-04       Impact factor: 7.996

2.  DNA tetraplex formation in the control region of c-myc.

Authors:  T Simonsson; P Pecinka; M Kubista
Journal:  Nucleic Acids Res       Date:  1998-03-01       Impact factor: 16.971

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Authors:  W I Sundquist; A Klug
Journal:  Nature       Date:  1989-12-14       Impact factor: 49.962

4.  Human DHX9 helicase preferentially unwinds RNA-containing displacement loops (R-loops) and G-quadruplexes.

Authors:  Prasun Chakraborty; Frank Grosse
Journal:  DNA Repair (Amst)       Date:  2011-05-10

5.  Human POT1 disrupts telomeric G-quadruplexes allowing telomerase extension in vitro.

Authors:  Arthur J Zaug; Elaine R Podell; Thomas R Cech
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-25       Impact factor: 11.205

6.  Superhelicity Constrains a Localized and R-Loop-Dependent Formation of G-Quadruplexes at the Upstream Region of Transcription.

Authors:  Ke-Wei Zheng; Yi-de He; Hong-He Liu; Xin-Min Li; Yu-Hua Hao; Zheng Tan
Journal:  ACS Chem Biol       Date:  2017-09-11       Impact factor: 5.100

7.  The importance of negative superhelicity in inducing the formation of G-quadruplex and i-motif structures in the c-Myc promoter: implications for drug targeting and control of gene expression.

Authors:  Daekyu Sun; Laurence H Hurley
Journal:  J Med Chem       Date:  2009-05-14       Impact factor: 7.446

8.  The functional response of upstream DNA to dynamic supercoiling in vivo.

Authors:  Fedor Kouzine; Suzanne Sanford; Zichrini Elisha-Feil; David Levens
Journal:  Nat Struct Mol Biol       Date:  2008-01-13       Impact factor: 15.369

9.  MEME-ChIP: motif analysis of large DNA datasets.

Authors:  Philip Machanick; Timothy L Bailey
Journal:  Bioinformatics       Date:  2011-04-12       Impact factor: 6.937

10.  RNA Helicase DDX1 Converts RNA G-Quadruplex Structures into R-Loops to Promote IgH Class Switch Recombination.

Authors:  Claudia Ribeiro de Almeida; Somdutta Dhir; Ashish Dhir; Amin E Moghaddam; Quentin Sattentau; Anton Meinhart; Nicholas J Proudfoot
Journal:  Mol Cell       Date:  2018-05-03       Impact factor: 17.970

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  30 in total

1.  Polymerase η Recruits DHX9 Helicase to Promote Replication across Guanine Quadruplex Structures.

Authors:  Feng Tang; Yinan Wang; Zi Gao; Shiyuan Guo; Yinsheng Wang
Journal:  J Am Chem Soc       Date:  2022-07-29       Impact factor: 16.383

Review 2.  Action and function of helicases on RNA G-quadruplexes.

Authors:  Marco Caterino; Katrin Paeschke
Journal:  Methods       Date:  2021-09-10       Impact factor: 4.647

3.  Promoter G-quadruplexes and transcription factors cooperate to shape the cell type-specific transcriptome.

Authors:  Sara Lago; Matteo Nadai; Filippo M Cernilogar; Maryam Kazerani; Helena Domíniguez Moreno; Gunnar Schotta; Sara N Richter
Journal:  Nat Commun       Date:  2021-06-23       Impact factor: 14.919

4.  The RNA helicase DDX5 supports mitochondrial function in small cell lung cancer.

Authors:  Zheng Xing; Matthew P Russon; Sagar M Utturkar; Elizabeth J Tran
Journal:  J Biol Chem       Date:  2020-05-06       Impact factor: 5.157

5.  RNA helicase DDX5 enables STAT1 mRNA translation and interferon signalling in hepatitis B virus replicating hepatocytes.

Authors:  Guanhui Wu; Florentin Pastor; Jiazeng Sun; Naimur Rahman; Wen-Hung Wang; Zhengtao Zhang; Philippe Merle; Lijian Hui; Anna Salvetti; David Durantel; Danzhou Yang; Ourania Andrisani
Journal:  Gut       Date:  2021-05-21       Impact factor: 23.059

Review 6.  To "Z" or not to "Z": Z-RNA, self-recognition, and the MDA5 helicase.

Authors:  Alan Herbert
Journal:  PLoS Genet       Date:  2021-05-13       Impact factor: 5.917

7.  A Quantitative Proteomic Approach for the Identification of DNA Guanine Quadruplex-Binding Proteins.

Authors:  Zi Gao; Preston Williams; Lin Li; Yinsheng Wang
Journal:  J Proteome Res       Date:  2021-09-27       Impact factor: 4.466

8.  Solution Structure of Ternary Complex of Berberine Bound to a dGMP-Fill-In Vacancy G-Quadruplex Formed in the PDGFR-β Promoter.

Authors:  Kai-Bo Wang; Jonathan Dickerhoff; Danzhou Yang
Journal:  J Am Chem Soc       Date:  2021-09-29       Impact factor: 16.383

Review 9.  Transcription, translation, and DNA repair: new insights from emerging noncanonical substrates of RNA helicases.

Authors:  Matthew P Russon; Kirsten M Westerhouse; Elizabeth J Tran
Journal:  Biol Chem       Date:  2020-12-14       Impact factor: 4.700

Review 10.  Epigenetic Modulation of Chromatin States and Gene Expression by G-Quadruplex Structures.

Authors:  Chiara Reina; Vincenzo Cavalieri
Journal:  Int J Mol Sci       Date:  2020-06-11       Impact factor: 5.923

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