Literature DB >> 31541787

Quantitative and rapid Plasmodium falciparum malaria diagnosis and artemisinin-resistance detection using a CMOS Lab-on-Chip platform.

Kenny Malpartida-Cardenas1, Nicholas Miscourides1, Jesus Rodriguez-Manzano2, Ling-Shan Yu1, Nicolas Moser1, Jake Baum3, Pantelis Georgiou1.   

Abstract

Early and accurate diagnosis of malaria and drug-resistance is essential to effective disease management. Available rapid malaria diagnostic tests present limitations in analytical sensitivity, drug-resistance testing and/or quantification. Conversely, diagnostic methods based on nucleic acid amplification stepped forwards owing to their high sensitivity, specificity and robustness. Nevertheless, these methods commonly rely on optical measurements and complex instrumentation which limit their applicability in resource-poor, point-of-care settings. This paper reports the specific, quantitative and fully-electronic detection of Plasmodium falciparum, the predominant malaria-causing parasite worldwide, using a Lab-on-Chip platform developed in-house. Furthermore, we demonstrate on-chip detection of C580Y, the most prevalent single-nucleotide polymorphism associated to artemisinin-resistant malaria. Real-time non-optical DNA sensing is facilitated using Ion-Sensitive Field-Effect Transistors, fabricated in unmodified complementary metal-oxide-semiconductor (CMOS) technology, coupled with loop-mediated isothermal amplification. This work holds significant potential for the development of a fully portable and quantitative malaria diagnostic that can be used as a rapid point-of-care test.
Copyright © 2019 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  CMOS; ISFET; LAMP; Lab-on-Chip; Malaria; P. falciparum; Point-of-Care; SNP

Mesh:

Substances:

Year:  2019        PMID: 31541787      PMCID: PMC7224984          DOI: 10.1016/j.bios.2019.111678

Source DB:  PubMed          Journal:  Biosens Bioelectron        ISSN: 0956-5663            Impact factor:   10.618


  41 in total

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Authors:  Eugenia M Khorosheva; Mikhail A Karymov; David A Selck; Rustem F Ismagilov
Journal:  Nucleic Acids Res       Date:  2015-09-10       Impact factor: 16.971

Review 2.  Point-of-Care Testing for Infectious Diseases: Past, Present, and Future.

Authors:  Thomas R Kozel; Amanda R Burnham-Marusich
Journal:  J Clin Microbiol       Date:  2017-05-24       Impact factor: 5.948

3.  Rapid and Sensitive Detection of Azole-Resistant Aspergillus fumigatus by Tandem Repeat Loop-Mediated Isothermal Amplification.

Authors:  Ling-Shan Yu; Jesus Rodriguez-Manzano; Kenny Malpartida-Cardenas; Thomas Sewell; Oliver Bader; Darius Armstrong-James; Matthew C Fisher; Pantelis Georgiou
Journal:  J Mol Diagn       Date:  2018-12-04       Impact factor: 5.568

4.  Mitochondrial DNA targets increase sensitivity of malaria detection using loop-mediated isothermal amplification.

Authors:  Spencer D Polley; Yasuyoshi Mori; Julie Watson; Mark D Perkins; Iveth J González; Tsugunori Notomi; Peter L Chiodini; Colin J Sutherland
Journal:  J Clin Microbiol       Date:  2010-06-16       Impact factor: 5.948

5.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

6.  Reading Out Single-Molecule Digital RNA and DNA Isothermal Amplification in Nanoliter Volumes with Unmodified Camera Phones.

Authors:  Jesus Rodriguez-Manzano; Mikhail A Karymov; Stefano Begolo; David A Selck; Dmitriy V Zhukov; Erik Jue; Rustem F Ismagilov
Journal:  ACS Nano       Date:  2016-02-22       Impact factor: 15.881

7.  Swedish traveller with Plasmodium knowlesi malaria after visiting Malaysian Borneo.

Authors:  Ulf Bronner; Paul C S Divis; Anna Färnert; Balbir Singh
Journal:  Malar J       Date:  2009-01-16       Impact factor: 2.979

8.  PlasmoDB: a functional genomic database for malaria parasites.

Authors:  Cristina Aurrecoechea; John Brestelli; Brian P Brunk; Jennifer Dommer; Steve Fischer; Bindu Gajria; Xin Gao; Alan Gingle; Greg Grant; Omar S Harb; Mark Heiges; Frank Innamorato; John Iodice; Jessica C Kissinger; Eileen Kraemer; Wei Li; John A Miller; Vishal Nayak; Cary Pennington; Deborah F Pinney; David S Roos; Chris Ross; Christian J Stoeckert; Charles Treatman; Haiming Wang
Journal:  Nucleic Acids Res       Date:  2008-10-28       Impact factor: 16.971

9.  An empirical approach for quantifying loop-mediated isothermal amplification (LAMP) using Escherichia coli as a model system.

Authors:  Sowmya Subramanian; Romel D Gomez
Journal:  PLoS One       Date:  2014-06-30       Impact factor: 3.240

10.  A liquid-crystal-based DNA biosensor for pathogen detection.

Authors:  Mashooq Khan; Abdur Rahim Khan; Jae-Ho Shin; Soo-Young Park
Journal:  Sci Rep       Date:  2016-03-04       Impact factor: 4.379

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  12 in total

1.  Lab-on-chip assay of tumour markers and human papilloma virus for cervical cancer detection at the point-of-care.

Authors:  Benjamin W Wormald; Nicolas Moser; Nandita M deSouza; Katerina-Theresa Mantikas; Kenny Malpartida-Cardenas; Ivana Pennisi; Thomas E J Ind; Katherine Vroobel; Melpomeni Kalofonou; Jesus Rodriguez-Manzano; Pantelis Georgiou
Journal:  Sci Rep       Date:  2022-05-24       Impact factor: 4.996

2.  Rapid Detection of Azole-Resistant Aspergillus fumigatus in Clinical and Environmental Isolates by Use of a Lab-on-a-Chip Diagnostic System.

Authors:  Ling-Shan Yu; Jesus Rodriguez-Manzano; Nicolas Moser; Ahmad Moniri; Kenny Malpartida-Cardenas; Nicholas Miscourides; Thomas Sewell; Tatiana Kochina; Amelie Brackin; Johanna Rhodes; Alison H Holmes; Matthew C Fisher; Pantelis Georgiou
Journal:  J Clin Microbiol       Date:  2020-10-21       Impact factor: 5.948

3.  Handheld Point-of-Care System for Rapid Detection of SARS-CoV-2 Extracted RNA in under 20 min.

Authors:  Jesus Rodriguez-Manzano; Kenny Malpartida-Cardenas; Nicolas Moser; Ivana Pennisi; Matthew Cavuto; Luca Miglietta; Ahmad Moniri; Rebecca Penn; Giovanni Satta; Paul Randell; Frances Davies; Frances Bolt; Wendy Barclay; Alison Holmes; Pantelis Georgiou
Journal:  ACS Cent Sci       Date:  2021-01-13       Impact factor: 14.553

Review 4.  Applications, challenges, and needs for employing synthetic biology beyond the lab.

Authors:  Sierra M Brooks; Hal S Alper
Journal:  Nat Commun       Date:  2021-03-02       Impact factor: 14.919

Review 5.  COVID-19 Diagnostic Strategies. Part I: Nucleic Acid-Based Technologies.

Authors:  Tina Shaffaf; Ebrahim Ghafar-Zadeh
Journal:  Bioengineering (Basel)       Date:  2021-04-17

Review 6.  Leapfrogging laboratories: the promise and pitfalls of high-tech solutions for antimicrobial resistance surveillance in low-income settings.

Authors:  Iruka N Okeke; Nicholas Feasey; Julian Parkhill; Paul Turner; Direk Limmathurotsakul; Pantelis Georgiou; Alison Holmes; Sharon J Peacock
Journal:  BMJ Glob Health       Date:  2020-12

Review 7.  Emerging point-of-care biosensors for rapid diagnosis of COVID-19: current progress, challenges, and future prospects.

Authors:  Yousef Rasmi; Xiaokang Li; Johra Khan; Tugba Ozer; Jane Ru Choi
Journal:  Anal Bioanal Chem       Date:  2021-05-18       Impact factor: 4.142

8.  Loop-Mediated Isothermal Amplification Assay for Detecting Tumor Markers and Human Papillomavirus: Accuracy and Supplemental Diagnostic Value to Endovaginal MRI in Cervical Cancer.

Authors:  Benjamin Wormald; Jesus Rodriguez-Manzano; Nicolas Moser; Ivana Pennisi; Thomas E J Ind; Katherine Vroobel; Ayoma Attygalle; Pantelis Georgiou; Nandita M deSouza
Journal:  Front Oncol       Date:  2021-11-01       Impact factor: 6.244

9.  A Biosynthetic Platform for Antimalarial Drug Discovery.

Authors:  Mark D Wilkinson; Hung-En Lai; Paul S Freemont; Jake Baum
Journal:  Antimicrob Agents Chemother       Date:  2020-04-21       Impact factor: 5.191

Review 10.  Multi-Omics Advancements towards Plasmodium vivax Malaria Diagnosis.

Authors:  Shalini Aggarwal; Weng Kung Peng; Sanjeeva Srivastava
Journal:  Diagnostics (Basel)       Date:  2021-11-28
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