Literature DB >> 31541134

Video-rate multi-color structured illumination microscopy with simultaneous real-time reconstruction.

Andreas Markwirth1, Mario Lachetta1, Viola Mönkemöller1,2, Rainer Heintzmann3,4, Wolfgang Hübner1, Thomas Huser5, Marcel Müller6,7.   

Abstract

Super-resolved structured illumination microscopy (SR-SIM) is among the fastest fluorescence microscopy techniques capable of surpassing the optical diffraction limit. Current custom-build instruments are able to deliver two-fold resolution enhancement with high acquisition speed. SR-SIM is usually a two-step process, with raw-data acquisition and subsequent, time-consuming post-processing for image reconstruction. In contrast, wide-field and (multi-spot) confocal techniques produce high-resolution images instantly. Such immediacy is also possible with SR-SIM, by tight integration of a video-rate capable SIM with fast reconstruction software. Here we present instant SR-SIM by VIGOR (Video-rate Immediate GPU-accelerated Open-Source Reconstruction). We demonstrate multi-color SR-SIM at video frame-rates, with less than 250 ms delay between measurement and reconstructed image display. This is achieved by modifying and extending high-speed SR-SIM image acquisition with a new, GPU-enhanced, network-enabled image-reconstruction software. We demonstrate high-speed surveying of biological samples in multiple colors and live imaging of moving mitochondria as an example of intracellular dynamics.

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Year:  2019        PMID: 31541134      PMCID: PMC6754501          DOI: 10.1038/s41467-019-12165-x

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  40 in total

1.  Time-lapse two-color 3D imaging of live cells with doubled resolution using structured illumination.

Authors:  Reto Fiolka; Lin Shao; E Hesper Rego; Michael W Davidson; Mats G L Gustafsson
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

2.  ADVANCED IMAGING. Extended-resolution structured illumination imaging of endocytic and cytoskeletal dynamics.

Authors:  Dong Li; Lin Shao; Bi-Chang Chen; Xi Zhang; Mingshu Zhang; Brian Moses; Daniel E Milkie; Jordan R Beach; John A Hammer; Mithun Pasham; Tomas Kirchhausen; Michelle A Baird; Michael W Davidson; Pingyong Xu; Eric Betzig
Journal:  Science       Date:  2015-08-28       Impact factor: 47.728

3.  Nonlinear structured-illumination microscopy: wide-field fluorescence imaging with theoretically unlimited resolution.

Authors:  Mats G L Gustafsson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-02       Impact factor: 11.205

4.  Direct stochastic optical reconstruction microscopy (dSTORM).

Authors:  Ulrike Endesfelder; Mike Heilemann
Journal:  Methods Mol Biol       Date:  2015

5.  Visualizing Intracellular Organelle and Cytoskeletal Interactions at Nanoscale Resolution on Millisecond Timescales.

Authors:  Yuting Guo; Di Li; Siwei Zhang; Yanrui Yang; Jia-Jia Liu; Xinyu Wang; Chong Liu; Daniel E Milkie; Regan P Moore; U Serdar Tulu; Daniel P Kiehart; Junjie Hu; Jennifer Lippincott-Schwartz; Eric Betzig; Dong Li
Journal:  Cell       Date:  2018-10-25       Impact factor: 41.582

6.  Multifocus structured illumination microscopy for fast volumetric super-resolution imaging.

Authors:  Sara Abrahamsson; Hans Blom; Ana Agostinho; Daniel C Jans; Aurelie Jost; Marcel Müller; Linnea Nilsson; Kristoffer Bernhem; Talley J Lambert; Rainer Heintzmann; Hjalmar Brismar
Journal:  Biomed Opt Express       Date:  2017-08-17       Impact factor: 3.732

7.  Fast, long-term, super-resolution imaging with Hessian structured illumination microscopy.

Authors:  Xiaoshuai Huang; Junchao Fan; Liuju Li; Haosen Liu; Runlong Wu; Yi Wu; Lisi Wei; Heng Mao; Amit Lal; Peng Xi; Liqiang Tang; Yunfeng Zhang; Yanmei Liu; Shan Tan; Liangyi Chen
Journal:  Nat Biotechnol       Date:  2018-04-11       Impact factor: 54.908

8.  Super-resolution video microscopy of live cells by structured illumination.

Authors:  Peter Kner; Bryant B Chhun; Eric R Griffis; Lukman Winoto; Mats G L Gustafsson
Journal:  Nat Methods       Date:  2009-04-26       Impact factor: 28.547

9.  Multimodal super-resolution optical microscopy visualizes the close connection between membrane and the cytoskeleton in liver sinusoidal endothelial cell fenestrations.

Authors:  Viola Mönkemöller; Cristina Øie; Wolfgang Hübner; Thomas Huser; Peter McCourt
Journal:  Sci Rep       Date:  2015-11-09       Impact factor: 4.379

10.  Open-source image reconstruction of super-resolution structured illumination microscopy data in ImageJ.

Authors:  Marcel Müller; Viola Mönkemöller; Simon Hennig; Wolfgang Hübner; Thomas Huser
Journal:  Nat Commun       Date:  2016-03-21       Impact factor: 14.919

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  21 in total

1.  Multicolor structured illumination microscopy and quantitative control of polychromatic light with a digital micromirror device.

Authors:  Peter T Brown; Rory Kruithoff; Gregory J Seedorf; Douglas P Shepherd
Journal:  Biomed Opt Express       Date:  2021-06-01       Impact factor: 3.732

2.  Open microscopy in the life sciences: quo vadis?

Authors:  Johannes Hohlbein; Benedict Diederich; Barbora Marsikova; Emmanuel G Reynaud; Séamus Holden; Wiebke Jahr; Robert Haase; Kirti Prakash
Journal:  Nat Methods       Date:  2022-09       Impact factor: 47.990

3.  Multi-color structured illumination microscopy for live cell imaging based on the enhanced image recombination transform algorithm.

Authors:  Tianyu Zhao; Huiwen Hao; Zhaojun Wang; Yansheng Liang; Kun Feng; Minru He; Xue Yun; Piero R Bianco; Yujie Sun; Baoli Yao; Ming Lei
Journal:  Biomed Opt Express       Date:  2021-05-17       Impact factor: 3.562

4.  Editorial for: Bertoni et al. ex vivo fluorescence confocal microscopy: prostatic and periprostatic tissues atlas and evaluation of the learning curve.

Authors:  Till Braunschweig; Ruth Knüchel-Clarke
Journal:  Virchows Arch       Date:  2020-01-31       Impact factor: 4.064

5.  Simultaneous co-localized super-resolution fluorescence microscopy and atomic force microscopy: combined SIM and AFM platform for the life sciences.

Authors:  Ana I Gómez-Varela; Dimitar R Stamov; Adelaide Miranda; Rosana Alves; Cláudia Barata-Antunes; Daphné Dambournet; David G Drubin; Sandra Paiva; Pieter A A De Beule
Journal:  Sci Rep       Date:  2020-01-24       Impact factor: 4.379

6.  Super-resolution fluorescence microscopy by line-scanning with an unmodified two-photon microscope.

Authors:  Christian Pilger; Jakub Pospíšil; Marcel Müller; Martin Ruoff; Martin Schütte; Heinrich Spiecker; Thomas Huser
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2021-04-26       Impact factor: 4.226

7.  GPU-accelerated real-time reconstruction in Python of three-dimensional datasets from structured illumination microscopy with hexagonal patterns.

Authors:  Hai Gong; Wenjun Guo; Mark A A Neil
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2021-04-26       Impact factor: 4.226

8.  Motion magnification analysis of microscopy videos of biological cells.

Authors:  Oren Shabi; Sari Natan; Avraham Kolel; Abhishek Mukherjee; Oren Tchaicheeyan; Haguy Wolfenson; Nahum Kiryati; Ayelet Lesman
Journal:  PLoS One       Date:  2020-11-05       Impact factor: 3.240

9.  Structured illumination microscopy with noise-controlled image reconstructions.

Authors:  Carlas S Smith; Johan A Slotman; Lothar Schermelleh; Nadya Chakrova; Sangeetha Hari; Yoram Vos; Cornelis W Hagen; Marcel Müller; Wiggert van Cappellen; Adriaan B Houtsmuller; Jacob P Hoogenboom; Sjoerd Stallinga
Journal:  Nat Methods       Date:  2021-06-14       Impact factor: 28.547

10.  Quantitative Analyses of Foot Processes, Mitochondria, and Basement Membranes by Structured Illumination Microscopy Using Elastica-Masson- and Periodic-Acid-Schiff-Stained Kidney Sections.

Authors:  Ayumi Matsumoto; Isao Matsui; Yusuke Katsuma; Seiichi Yasuda; Karin Shimada; Tomoko Namba-Hamano; Yusuke Sakaguchi; Jun-Ya Kaimori; Yoshitsugu Takabatake; Kazunori Inoue; Yoshitaka Isaka
Journal:  Kidney Int Rep       Date:  2021-05-01
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