Literature DB >> 31539226

In-Depth Compositional and Structural Characterization of N-Glycans Derived from Human Urinary Exosomes.

Woran Song1, Xiaomei Zhou1, John D Benktander1, Stefan Gaunitz1, Guozhang Zou1, Ziyu Wang1, Milos V Novotny1, Stephen C Jacobson1.   

Abstract

The study of exosomes has become increasingly popular due to their potentially important biological roles. Urine can be used as an effective source of exosomes for noninvasive investigations into the pathophysiological states of the urinary system, but first, detailed characterization of exosomal components in healthy individuals is essential. Here, we significantly extend the number of N-glycan compositions, including sulfated species, identified from urinary exosomes and determine the sialic acid linkages for many of those compositions. Capillary electrophoresis-mass spectrometry (CE-MS), matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS), and capillary liquid chromatography-tandem mass spectrometry (LC-MS/MS) were used to identify N-glycan and sulfated N-glycan compositions. Second, because the alteration of sialylation patterns has been previously implicated in various disease states, ion-exchange chromatography, microfluidic capillary electrophoresis (CE), and MALDI-MS were adopted to resolve positional isomers of sialic acids. Structures of the sialyl-linkage isomers were assigned indirectly through α2-3 sialidase treatment and sialic acid linkage-specific alkylamidation (SALSA). In total, we have identified 219 N-glycan structures that include 175 compositions, 64 sialic acid linkage isomers, 26 structural isomers, and 27 sulfated glycans.

Entities:  

Year:  2019        PMID: 31539226      PMCID: PMC6834888          DOI: 10.1021/acs.analchem.9b02620

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  33 in total

Review 1.  Prospects for urinary proteomics: exosomes as a source of urinary biomarkers.

Authors:  Ewout J Hoorn; Trairak Pisitkun; Robert Zietse; Peter Gross; Joergen Frokiaer; Nam Sun Wang; Patricia A Gonzales; Robert A Star; Mark A Knepper
Journal:  Nephrology (Carlton)       Date:  2005-06       Impact factor: 2.506

2.  Nucleic acids within urinary exosomes/microvesicles are potential biomarkers for renal disease.

Authors:  Kevin C Miranda; Daniel T Bond; Mary McKee; Johan Skog; Teodor G Păunescu; Nicolas Da Silva; Dennis Brown; Leileata M Russo
Journal:  Kidney Int       Date:  2010-04-28       Impact factor: 10.612

3.  Serum glycome profiling: a biomarker for diagnosis of ovarian cancer.

Authors:  Karina Biskup; Elena I Braicu; Jalid Sehouli; Christina Fotopoulou; Rudolf Tauber; Markus Berger; Véronique Blanchard
Journal:  J Proteome Res       Date:  2013-07-29       Impact factor: 4.466

4.  Sequential enrichment of sulfated glycans by strong anion-exchange chromatography prior to mass spectrometric measurements.

Authors:  Ming Lei; Milos V Novotny; Yehia Mechref
Journal:  J Am Soc Mass Spectrom       Date:  2009-09-30       Impact factor: 3.109

5.  Clinical correlations of alpha2,6-sialyltransferase expression in colorectal cancer patients.

Authors:  M Lise; C Belluco; S P Perera; R Patel; P Thomas; A Ganguly
Journal:  Hybridoma       Date:  2000-08

6.  Structural Characterization of Serum N-Glycans by Methylamidation, Fluorescent Labeling, and Analysis by Microchip Electrophoresis.

Authors:  Indranil Mitra; Christa M Snyder; Xiaomei Zhou; Margit I Campos; William R Alley; Milos V Novotny; Stephen C Jacobson
Journal:  Anal Chem       Date:  2016-09-02       Impact factor: 6.986

7.  Electrophoretic analysis of N-glycans on microfluidic devices.

Authors:  Zexi Zhuang; Jason A Starkey; Yehia Mechref; Milos V Novotny; Stephen C Jacobson
Journal:  Anal Chem       Date:  2007-08-09       Impact factor: 6.986

8.  Exosomes provide a protective and enriched source of miRNA for biomarker profiling compared to intracellular and cell-free blood.

Authors:  Lesley Cheng; Robyn A Sharples; Benjamin J Scicluna; Andrew F Hill
Journal:  J Extracell Vesicles       Date:  2014-03-26

Review 9.  Exosomes in Cancer Diagnostics.

Authors:  Young Hwa Soung; Shane Ford; Vincent Zhang; Jun Chung
Journal:  Cancers (Basel)       Date:  2017-01-12       Impact factor: 6.639

10.  Q&A: What are exosomes, exactly?

Authors:  James R Edgar
Journal:  BMC Biol       Date:  2016-06-13       Impact factor: 7.431

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  8 in total

Review 1.  What can urinary exosomes tell us?

Authors:  Rui Vitorino; Rita Ferreira; Sofia Guedes; Francisco Amado; Visith Thongboonkerd
Journal:  Cell Mol Life Sci       Date:  2021-01-28       Impact factor: 9.261

2.  Fractionation and characterization of sialyl linkage isomers of serum N-glycans by CE-MS.

Authors:  Xiaomei Zhou; Woran Song; Milos V Novotny; Stephen C Jacobson
Journal:  J Sep Sci       Date:  2022-09       Impact factor: 3.614

Review 3.  Current applications of capillary electrophoresis-mass spectrometry for the analysis of biologically important analytes in urine (2017 to mid-2021): A review.

Authors:  Hrušková Helena; Voráčová Ivona; Řemínek Roman; Foret František
Journal:  J Sep Sci       Date:  2021-10-07       Impact factor: 3.614

4.  Exosome-Mediated Crosstalk between Keratinocytes and Macrophages in Cutaneous Wound Healing.

Authors:  Xiaoju Zhou; Brooke A Brown; Amanda P Siegel; Mohamed S El Masry; Xuyao Zeng; Woran Song; Amitava Das; Puneet Khandelwal; Andrew Clark; Kanhaiya Singh; Poornachander R Guda; Mahadeo Gorain; Lava Timsina; Yi Xuan; Stephen C Jacobson; Milos V Novotny; Sashwati Roy; Mangilal Agarwal; Robert J Lee; Chandan K Sen; David E Clemmer; Subhadip Ghatak
Journal:  ACS Nano       Date:  2020-09-25       Impact factor: 15.881

5.  Glycoproteomic Analysis of Human Urinary Exosomes.

Authors:  Christopher J Brown; Stefan Gaunitz; Ziyu Wang; Lena Strindelius; Stephen C Jacobson; David E Clemmer; Jonathan C Trinidad; Milos V Novotny
Journal:  Anal Chem       Date:  2020-10-13       Impact factor: 6.986

6.  Magnetic porous carbon-dependent platform for the determination of N-glycans from urine exosomes.

Authors:  Yonglei Wu; Ning Zhang; Hao Wu; Nianrong Sun; Chunhui Deng
Journal:  Mikrochim Acta       Date:  2021-02-04       Impact factor: 5.833

7.  Direct N-Glycosylation Profiling of Urine and Prostatic Fluid Glycoproteins and Extracellular Vesicles.

Authors:  Calvin R K Blaschke; Jordan P Hartig; Grace Grimsley; Liping Liu; O John Semmes; Jennifer D Wu; Joseph E Ippolito; Chanita Hughes-Halbert; Julius O Nyalwidhe; Richard R Drake
Journal:  Front Chem       Date:  2021-09-27       Impact factor: 5.221

Review 8.  MS-based glycomics and glycoproteomics methods enabling isomeric characterization.

Authors:  Wenjing Peng; Cristian D Gutierrez Reyes; Sakshi Gautam; Aiying Yu; Byeong Gwan Cho; Mona Goli; Kaitlyn Donohoo; Stefania Mondello; Firas Kobeissy; Yehia Mechref
Journal:  Mass Spectrom Rev       Date:  2021-06-22       Impact factor: 9.011

  8 in total

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