Literature DB >> 32985870

Glycoproteomic Analysis of Human Urinary Exosomes.

Christopher J Brown1, Stefan Gaunitz1, Ziyu Wang1, Lena Strindelius1, Stephen C Jacobson1, David E Clemmer1, Jonathan C Trinidad1, Milos V Novotny1.   

Abstract

Exosomes represent a class of secreted biological vesicles, which have recently gained attention due to their function as intertissue and interorganism transporters of genetic materials, small molecules, lipids, and proteins. Although the protein constituents of these exosomes are often glycosylated, a large-scale characterization of the glycoproteome has not yet been completed. This study identified 3144 unique glycosylation events belonging to 378 glycoproteins and 604 unique protein sites of glycosylation. With these data, we investigated the level of glycan microheterogeneity within the urinary exosomes, finding on average 5.9 glycans per site. The glycan family abundance on individual proteins showed subtle differences, providing an additional level of molecular characterization compared to the unmodified proteome. Finally, we show protein site-specific changes in regard to the common urinary glycoprotein, uromodulin. While uromodulin is an individual case, these same site-specific analyses provide a way forward for developing diagnostic glycoprotein biomarkers with urine as a noninvasive biological fluid. This study represents an important first step in understanding the functional urinary glycoproteome.

Entities:  

Mesh:

Substances:

Year:  2020        PMID: 32985870      PMCID: PMC7875506          DOI: 10.1021/acs.analchem.0c01952

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  65 in total

Review 1.  Membrane vesicle release in bacteria, eukaryotes, and archaea: a conserved yet underappreciated aspect of microbial life.

Authors:  Brooke L Deatherage; Brad T Cookson
Journal:  Infect Immun       Date:  2012-03-12       Impact factor: 3.441

2.  Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition.

Authors:  Jeffrey C Silva; Marc V Gorenstein; Guo-Zhong Li; Johannes P C Vissers; Scott J Geromanos
Journal:  Mol Cell Proteomics       Date:  2005-10-11       Impact factor: 5.911

Review 3.  Ectosomes and exosomes: shedding the confusion between extracellular vesicles.

Authors:  Emanuele Cocucci; Jacopo Meldolesi
Journal:  Trends Cell Biol       Date:  2015-02-12       Impact factor: 20.808

Review 4.  The ER exit sites are specialized ER zones for the transport of cargo proteins from the ER to the Golgi apparatus.

Authors:  Kazuo Kurokawa; Akihiko Nakano
Journal:  J Biochem       Date:  2019-02-01       Impact factor: 3.387

5.  N-linked (N-) glycoproteomics of urinary exosomes. [Corrected].

Authors:  Mayank Saraswat; Sakari Joenväära; Luca Musante; Hannu Peltoniemi; Harry Holthofer; Risto Renkonen
Journal:  Mol Cell Proteomics       Date:  2014-12-01       Impact factor: 5.911

6.  Fucosylated haptoglobin is a novel marker for pancreatic cancer: a detailed analysis of the oligosaccharide structure and a possible mechanism for fucosylation.

Authors:  Noriko Okuyama; Yoshihito Ide; Miyako Nakano; Tsutomu Nakagawa; Kanako Yamanaka; Kenta Moriwaki; Kohei Murata; Hiroaki Ohigashi; Shigekazu Yokoyama; Hidetoshi Eguchi; Osamu Ishikawa; Toshifumi Ito; Michio Kato; Akinori Kasahara; Sunao Kawano; Jianguo Gu; Naoyuki Taniguchi; Eiji Miyoshi
Journal:  Int J Cancer       Date:  2006-06-01       Impact factor: 7.396

7.  Insights into structural and regulatory roles of Sec16 in COPII vesicle formation at ER exit sites.

Authors:  Tomohiro Yorimitsu; Ken Sato
Journal:  Mol Biol Cell       Date:  2012-06-06       Impact factor: 4.138

8.  Brain metastatic cancer cells release microRNA-181c-containing extracellular vesicles capable of destructing blood-brain barrier.

Authors:  Naoomi Tominaga; Nobuyoshi Kosaka; Makiko Ono; Takeshi Katsuda; Yusuke Yoshioka; Kenji Tamura; Jan Lötvall; Hitoshi Nakagama; Takahiro Ochiya
Journal:  Nat Commun       Date:  2015-04-01       Impact factor: 14.919

9.  pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification.

Authors:  Ming-Qi Liu; Wen-Feng Zeng; Pan Fang; Wei-Qian Cao; Chao Liu; Guo-Quan Yan; Yang Zhang; Chao Peng; Jian-Qiang Wu; Xiao-Jin Zhang; Hui-Jun Tu; Hao Chi; Rui-Xiang Sun; Yong Cao; Meng-Qiu Dong; Bi-Yun Jiang; Jiang-Ming Huang; Hua-Li Shen; Catherine C L Wong; Si-Min He; Peng-Yuan Yang
Journal:  Nat Commun       Date:  2017-09-05       Impact factor: 14.919

10.  Monitoring multiple myeloma by idiotype-specific peptide binders of tumor-derived exosomes.

Authors:  Enrico Iaccino; Selena Mimmi; Vincenzo Dattilo; Fabiola Marino; Patrizio Candeloro; Antonio Di Loria; Danilo Marimpietri; Antonio Pisano; Francesco Albano; Eleonora Vecchio; Simona Ceglia; Gaetanina Golino; Antonio Lupia; Giuseppe Fiume; Ileana Quinto; Giuseppe Scala
Journal:  Mol Cancer       Date:  2017-10-13       Impact factor: 27.401

View more
  5 in total

Review 1.  Towards structure-focused glycoproteomics.

Authors:  Anastasia Chernykh; Rebeca Kawahara; Morten Thaysen-Andersen
Journal:  Biochem Soc Trans       Date:  2021-02-26       Impact factor: 5.407

2.  Direct N-Glycosylation Profiling of Urine and Prostatic Fluid Glycoproteins and Extracellular Vesicles.

Authors:  Calvin R K Blaschke; Jordan P Hartig; Grace Grimsley; Liping Liu; O John Semmes; Jennifer D Wu; Joseph E Ippolito; Chanita Hughes-Halbert; Julius O Nyalwidhe; Richard R Drake
Journal:  Front Chem       Date:  2021-09-27       Impact factor: 5.221

Review 3.  Strategies for Proteome-Wide Quantification of Glycosylation Macro- and Micro-Heterogeneity.

Authors:  Pan Fang; Yanlong Ji; Thomas Oellerich; Henning Urlaub; Kuan-Ting Pan
Journal:  Int J Mol Sci       Date:  2022-01-30       Impact factor: 5.923

4.  The microenvironment-a general hypothesis on the homeostatic function of extracellular vesicles.

Authors:  Amber N Stratman; Clair Crewe; Philip D Stahl
Journal:  FASEB Bioadv       Date:  2022-03-12

Review 5.  Circulating Exosome Cargoes Contain Functionally Diverse Cancer Biomarkers: From Biogenesis and Function to Purification and Potential Translational Utility.

Authors:  Megan I Mitchell; Junfeng Ma; Claire L Carter; Olivier Loudig
Journal:  Cancers (Basel)       Date:  2022-07-10       Impact factor: 6.575

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.