Literature DB >> 31538144

Inferring Multidimensional Rates of Aging from Cross-Sectional Data.

Emma Pierson1, Pang Wei Koh1, Tatsunori Hashimoto2, Daphne Koller3, Jure Leskovec2, Nicholas Eriksson4, Percy Liang2.   

Abstract

Modeling how individuals evolve over time is a fundamental problem in the natural and social sciences. However, existing datasets are often cross-sectional with each individual observed only once, making it impossible to apply traditional time-series methods. Motivated by the study of human aging, we present an interpretable latent-variable model that learns temporal dynamics from cross-sectional data. Our model represents each individual's features over time as a nonlinear function of a low-dimensional, linearly-evolving latent state. We prove that when this nonlinear function is constrained to be order-isomorphic, the model family is identifiable solely from cross-sectional data provided the distribution of time-independent variation is known. On the UK Biobank human health dataset, our model reconstructs the observed data while learning interpretable rates of aging associated with diseases, mortality, and aging risk factors.

Entities:  

Year:  2019        PMID: 31538144      PMCID: PMC6752884     

Source DB:  PubMed          Journal:  Proc Mach Learn Res


  40 in total

1.  How can we learn about developmental processes from cross-sectional studies, or can we?

Authors:  H C Kraemer; J A Yesavage; J L Taylor; D Kupfer
Journal:  Am J Psychiatry       Date:  2000-02       Impact factor: 18.112

2.  Estimating transition probabilities from aggregate samples plus partial transition data.

Authors:  D L Hawkins; C P Han
Journal:  Biometrics       Date:  2000-09       Impact factor: 2.571

3.  Assessment of biological age by multiple regression analysis.

Authors:  T Furukawa; M Inoue; F Kajiya; H Inada; S Takasugi
Journal:  J Gerontol       Date:  1975-07

4.  Reconstructing the temporal ordering of biological samples using microarray data.

Authors:  Paul M Magwene; Paul Lizardi; Junhyong Kim
Journal:  Bioinformatics       Date:  2003-05-01       Impact factor: 6.937

5.  Biological age and 12-year cognitive change in older adults: findings from the Victoria Longitudinal Study.

Authors:  Stuart W S MacDonald; Roger A Dixon; Anna-Lisa Cohen; Janine E Hazlitt
Journal:  Gerontology       Date:  2004 Mar-Apr       Impact factor: 5.140

6.  A new approach to the concept and computation of biological age.

Authors:  Petr Klemera; Stanislav Doubal
Journal:  Mech Ageing Dev       Date:  2005-11-28       Impact factor: 5.432

7.  Reference ranges for spirometry across all ages: a new approach.

Authors:  Sanja Stanojevic; Angie Wade; Janet Stocks; John Hankinson; Allan L Coates; Huiqi Pan; Mark Rosenthal; Mary Corey; Patrick Lebecque; Tim J Cole
Journal:  Am J Respir Crit Care Med       Date:  2007-11-15       Impact factor: 21.405

8.  Extracting dynamics from static cancer expression data.

Authors:  Anupam Gupta; Ziv Bar-Joseph
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2008 Apr-Jun       Impact factor: 3.710

9.  The loss of skeletal muscle strength, mass, and quality in older adults: the health, aging and body composition study.

Authors:  Bret H Goodpaster; Seok Won Park; Tamara B Harris; Steven B Kritchevsky; Michael Nevitt; Ann V Schwartz; Eleanor M Simonsick; Frances A Tylavsky; Marjolein Visser; Anne B Newman
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2006-10       Impact factor: 6.053

10.  Relationships between platelets and inflammatory markers in rheumatoid arthritis.

Authors:  M Milovanovic; E Nilsson; P Järemo
Journal:  Clin Chim Acta       Date:  2004-05       Impact factor: 3.786

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  5 in total

1.  Incorporating External Information in Tissue Subtyping: A Topic Modeling Approach.

Authors:  Ardavan Saeedi; Payman Yadollahpour; Sumedha Singla; Brian Pollack; William Wells; Frank Sciurba; Kayhan Batmanghelich
Journal:  Proc Mach Learn Res       Date:  2021

2.  A Variational Approximation for Analyzing the Dynamics of Panel Data.

Authors:  Jurijs Nazarovs; Rudrasis Chakraborty; Songwong Tasneeyapant; Sathya N Ravi; Vikas Singh
Journal:  Uncertain Artif Intell       Date:  2021-07

3.  Interpretable machine learning for high-dimensional trajectories of aging health.

Authors:  Spencer Farrell; Arnold Mitnitski; Kenneth Rockwood; Andrew D Rutenberg
Journal:  PLoS Comput Biol       Date:  2022-01-10       Impact factor: 4.475

4.  Generating synthetic aging trajectories with a weighted network model using cross-sectional data.

Authors:  Spencer Farrell; Arnold Mitnitski; Kenneth Rockwood; Andrew Rutenberg
Journal:  Sci Rep       Date:  2020-11-16       Impact factor: 4.379

5.  A Biomarker-based Biological Age in UK Biobank: Composition and Prediction of Mortality and Hospital Admissions.

Authors:  Mei Sum Chan; Matthew Arnold; Alison Offer; Imen Hammami; Marion Mafham; Jane Armitage; Rafael Perera; Sarah Parish
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2021-06-14       Impact factor: 6.053

  5 in total

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