Literature DB >> 31534649

Synthetic small-molecule RNA ligands: future prospects as therapeutic agents.

A Di Giorgio1, M Duca1.   

Abstract

RNA is one of the most intriguing and promising biological targets for the discovery of innovative drugs in many pathologies and various biologically relevant RNAs that could serve as drug targets have already been identified. Among the most important ones, one can mention prokaryotic ribosomal RNA which is the target of several marketed antibiotics, viral RNAs or oncogenic microRNAs that are tightly involved in the development and progression of various cancers. Oligonucleotides are efficient and specific RNA targeting agents but suffer from poor pharmacodynamic and pharmacokinetic properties. For this reason, a number of synthetic small-molecule ligands have been identified and studied upon screening of chemical libraries or focused design of RNA binders. In this review, we report the most relevant examples of synthetic compounds bearing sufficient selectivity to envisage clinical studies and future therapeutic applications with a particular attention for the main strategies that can be undertaken toward the improvement of selectivity and biological activity.

Entities:  

Year:  2019        PMID: 31534649      PMCID: PMC6748380          DOI: 10.1039/c9md00195f

Source DB:  PubMed          Journal:  Medchemcomm        ISSN: 2040-2503            Impact factor:   3.597


  102 in total

1.  Hepatitis C viral IRES inhibition by phenazine and phenazine-like molecules.

Authors:  W Wang; P Préville; N Morin; S Mounir; W Cai; M A Siddiqui
Journal:  Bioorg Med Chem Lett       Date:  2000-06-05       Impact factor: 2.823

2.  Biaryl guanidine inhibitors of in vitro HCV-IRES activity.

Authors:  Elizabeth A Jefferson; Punit P Seth; Dale E Robinson; Dana K Winter; Alycia Miyaji; Stephen A Osgood; Eric E Swayze; Lisa M Risen
Journal:  Bioorg Med Chem Lett       Date:  2004-10-18       Impact factor: 2.823

3.  SAR by MS: discovery of a new class of RNA-binding small molecules for the hepatitis C virus: internal ribosome entry site IIA subdomain.

Authors:  Punit P Seth; Alycia Miyaji; Elizabeth A Jefferson; Kristin A Sannes-Lowery; Stephen A Osgood; Stephanie S Propp; Ray Ranken; Christian Massire; Rangarajan Sampath; David J Ecker; Eric E Swayze; Richard H Griffey
Journal:  J Med Chem       Date:  2005-11-17       Impact factor: 7.446

4.  A small molecule microarray platform to select RNA internal loop-ligand interactions.

Authors:  Jessica L Childs-Disney; Meilan Wu; Alexei Pushechnikov; Olga Aminova; Matthew D Disney
Journal:  ACS Chem Biol       Date:  2007-11-02       Impact factor: 5.100

Review 5.  Targeting RNA with small molecules.

Authors:  Jason R Thomas; Paul J Hergenrother
Journal:  Chem Rev       Date:  2008-03-25       Impact factor: 60.622

6.  A tale of two targets: differential RNA selectivity of nucleobase-aminoglycoside conjugates.

Authors:  Kenneth F Blount; Yitzhak Tor
Journal:  Chembiochem       Date:  2006-10       Impact factor: 3.164

7.  Coordinated assembly of human translation initiation complexes by the hepatitis C virus internal ribosome entry site RNA.

Authors:  Hong Ji; Christopher S Fraser; Yonghao Yu; Julie Leary; Jennifer A Doudna
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-24       Impact factor: 11.205

8.  Small molecule modulators of HIV Rev/Rev response element interaction identified by random screening.

Authors:  Richard L Chapman; Thomas B Stanley; Richard Hazen; Edward P Garvey
Journal:  Antiviral Res       Date:  2002-06       Impact factor: 5.970

9.  Targeting the dimerization initiation site of HIV-1 RNA with aminoglycosides: from crystal to cell.

Authors:  Eric Ennifar; Jean-Christophe Paillart; Anne Bodlenner; Philippe Walter; Jean-Marc Weibel; Anne-Marie Aubertin; Patrick Pale; Philippe Dumas; Roland Marquet
Journal:  Nucleic Acids Res       Date:  2006-05-05       Impact factor: 16.971

Review 10.  The regulation of HIV-1 transcription: molecular targets for chemotherapeutic intervention.

Authors:  Miguel Stevens; Erik De Clercq; Jan Balzarini
Journal:  Med Res Rev       Date:  2006-09       Impact factor: 12.944

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  17 in total

Review 1.  Design of small molecules targeting RNA structure from sequence.

Authors:  Andrei Ursu; Jessica L Childs-Disney; Ryan J Andrews; Collin A O'Leary; Samantha M Meyer; Alicia J Angelbello; Walter N Moss; Matthew D Disney
Journal:  Chem Soc Rev       Date:  2020-10-19       Impact factor: 54.564

2.  Small molecule-RNA targeting: starting with the fundamentals.

Authors:  Amanda E Hargrove
Journal:  Chem Commun (Camb)       Date:  2020-11-26       Impact factor: 6.222

Review 3.  Drugging the "undruggable" microRNAs.

Authors:  Dejun Liu; Xinqiang Wan; Xiangxiang Shan; Rengen Fan; Wenzhang Zha
Journal:  Cell Mol Life Sci       Date:  2020-10-14       Impact factor: 9.261

4.  Gini Coefficients as a Single Value Metric to Define Chemical Probe Selectivity.

Authors:  Andrei Ursu; Jessica L Childs-Disney; Alicia J Angelbello; Matthew G Costales; Samantha M Meyer; Matthew D Disney
Journal:  ACS Chem Biol       Date:  2020-07-09       Impact factor: 5.100

5.  Development of 2-deoxystreptamine-nucleobase conjugates for the inhibition of oncogenic miRNA production.

Authors:  Thi Phuong Anh Tran; Sylvain Poulet; Mélanie Pernak; Anita Rayar; Stéphane Azoulay; Audrey Di Giorgio; Maria Duca
Journal:  RSC Med Chem       Date:  2021-12-16

6.  RNA Drugs and RNA Targets for Small Molecules: Principles, Progress, and Challenges.

Authors:  Ai-Ming Yu; Young Hee Choi; Mei-Juan Tu
Journal:  Pharmacol Rev       Date:  2020-10       Impact factor: 25.468

7.  R-BIND: An Interactive Database for Exploring and Developing RNA-Targeted Chemical Probes.

Authors:  Brittany S Morgan; Bilva G Sanaba; Anita Donlic; Diane B Karloff; Jordan E Forte; Yuqi Zhang; Amanda E Hargrove
Journal:  ACS Chem Biol       Date:  2019-10-29       Impact factor: 5.100

8.  How We Think about Targeting RNA with Small Molecules.

Authors:  Matthew G Costales; Jessica L Childs-Disney; Hafeez S Haniff; Matthew D Disney
Journal:  J Med Chem       Date:  2020-03-26       Impact factor: 7.446

Review 9.  Unnatural bases for recognition of noncoding nucleic acid interfaces.

Authors:  Shiqin Miao; Yufeng Liang; Sarah Rundell; Debmalya Bhunia; Shekar Devari; Oliver Munyaradzi; Dennis Bong
Journal:  Biopolymers       Date:  2020-09-24       Impact factor: 2.505

10.  Ditopic Aza-Scorpiand Ligands Interact Selectively with ds-RNA and Modulate the Interaction upon Formation of Zn2+ Complexes.

Authors:  Lluís Guijarro; Álvaro Martínez-Camarena; Javier U Chicote; Antonio García-España; Enrique García-España; Mario Inclán; Begoña Verdejo; Jorge González-García
Journal:  Molecules       Date:  2021-06-28       Impact factor: 4.411

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