Literature DB >> 31518483

Identification of the C-Glycoside Synthases during Biosynthesis of the Pyrazole-C-Nucleosides Formycin and Pyrazofurin.

Daan Ren1, Shao-An Wang1, Yeonjin Ko1, Yujie Geng1, Yasushi Ogasawara1,2, Hung-Wen Liu1.   

Abstract

C-Nucleosides are characterized by a C-C rather than a C-N linkage between the heterocyclic base and the ribofuranose ring. While the biosynthesis of pseudouridine-C-nucleosides has been studied, less is known about the pyrazole-C-nucleosides such as the formycins and pyrazofurin. Herein, genome screening of Streptomyces candidus NRRL 3601 led to the discovery of the pyrazofurin biosynthetic gene cluster pyf. In vitro characterization of gene product PyfQ demonstrated that it is able to catalyze formation of the C-glycoside carboxyhydroxypyrazole ribonucleotide (CHPR) from 4-hydroxy-1H-pyrazole-3,5-dicarboxylic acid and phosphoribosyl pyrophosphate (PRPP). Similarly, ForT, the PyfQ homologue in the formycin pathway, can catalyze the coupling of 4-amino-1H-pyrazole-3,5-dicarboxylic acid and PRPP to form carboxyaminopyrazole ribonucleotide. Finally, PyfP and PyfT are shown to catalyze amidation of CHPR to pyrazofurin 5'-phosphate thereby establishing the latter stages of both pyrazofurin and formycin biosynthesis.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  C-glycosidation reaction; C-nucleosides; biosynthesis; biosynthetic gene cluster; enzyme mechanism

Year:  2019        PMID: 31518483      PMCID: PMC6911263          DOI: 10.1002/anie.201910356

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  39 in total

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10.  Purification, kinetic characterization, and site-directed mutagenesis of Methanothermobacter thermautotrophicus RFAP Synthase Produced in Escherichia coli.

Authors:  Matthew E Bechard; Payam Farahani; Dina Greene; Anna Pham; Andrew Orry; Madeline E Rasche
Journal:  AIMS Microbiol       Date:  2019-07-23
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  8 in total

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Review 3.  Biosynthesis of C-nucleoside antibiotics in actinobacteria: recent advances and future developments.

Authors:  Meng Zhang; Liyuan Kong; Rong Gong; Marianna Iorio; Stefano Donadio; Zixin Deng; Margherita Sosio; Wenqing Chen
Journal:  Microb Cell Fact       Date:  2022-01-04       Impact factor: 5.328

4.  Reverse C-glycosidase reaction provides C-nucleotide building blocks of xenobiotic nucleic acids.

Authors:  Martin Pfeiffer; Bernd Nidetzky
Journal:  Nat Commun       Date:  2020-12-08       Impact factor: 14.919

5.  Molecular basis of enzymatic nitrogen-nitrogen formation by a family of zinc-binding cupin enzymes.

Authors:  Guiyun Zhao; Wei Peng; Kaihui Song; Jingkun Shi; Xingyu Lu; Binju Wang; Yi-Ling Du
Journal:  Nat Commun       Date:  2021-12-10       Impact factor: 14.919

6.  Uncovering the chemistry of C-C bond formation in C-nucleoside biosynthesis: crystal structure of a C-glycoside synthase/PRPP complex.

Authors:  Sisi Gao; Ashish Radadiya; Wenbo Li; Huanting Liu; Wen Zhu; Valérie de Crécy-Lagard; Nigel G J Richards; James H Naismith
Journal:  Chem Commun (Camb)       Date:  2020-06-09       Impact factor: 6.222

7.  Identification of a Pyrrole Intermediate Which Undergoes C-Glycosidation and Autoxidation to Yield the Final Product in Showdomycin Biosynthesis.

Authors:  Daan Ren; Minje Kim; Shao-An Wang; Hung-Wen Liu
Journal:  Angew Chem Int Ed Engl       Date:  2021-06-24       Impact factor: 16.823

8.  Whole-Genome Sequence of Streptomyces kaniharaensis Shomura and Niida SF-557.

Authors:  Wen Zhu; Xuan Liu; Margaret Hughes; Valérie de Crécy-Lagard; Nigel G J Richards
Journal:  Microbiol Resour Announc       Date:  2020-04-02
  8 in total

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