Literature DB >> 31509407

OpenMolcas: From Source Code to Insight.

Ignacio Fdez Galván1,2, Morgane Vacher1, Ali Alavi3, Celestino Angeli4, Francesco Aquilante5, Jochen Autschbach6, Jie J Bao7, Sergey I Bokarev8, Nikolay A Bogdanov3, Rebecca K Carlson7, Liviu F Chibotaru9, Joel Creutzberg10,11, Nike Dattani12, Mickaël G Delcey1, Sijia S Dong7, Andreas Dreuw13, Leon Freitag14, Luis Manuel Frutos15, Laura Gagliardi7, Frédéric Gendron6, Angelo Giussani16,17, Leticia González18, Gilbert Grell8, Meiyuan Guo1, Chad E Hoyer7, Marcus Johansson11, Sebastian Keller14, Stefan Knecht14, Goran Kovačević19, Erik Källman1, Giovanni Li Manni3, Marcus Lundberg1, Yingjin Ma14, Sebastian Mai18, João Pedro Malhado20, Per Åke Malmqvist11, Philipp Marquetand18, Stefanie A Mewes13,21, Jesper Norell10, Massimo Olivucci22,23,24, Markus Oppel18, Quan Manh Phung25, Kristine Pierloot25, Felix Plasser26, Markus Reiher14, Andrew M Sand7, Igor Schapiro27, Prachi Sharma7, Christopher J Stein14, Lasse Kragh Sørensen1, Donald G Truhlar7, Mihkel Ugandi1, Liviu Ungur28, Alessio Valentini29, Steven Vancoillie11, Valera Veryazov11, Oskar Weser3, Tomasz A Wesołowski5, Per-Olof Widmark11, Sebastian Wouters30, Alexander Zech5, J Patrick Zobel11, Roland Lindh2,31.   

Abstract

In this Article we describe the OpenMolcas environment and invite the computational chemistry community to collaborate. The open-source project already includes a large number of new developments realized during the transition from the commercial MOLCAS product to the open-source platform. The paper initially describes the technical details of the new software development platform. This is followed by brief presentations of many new methods, implementations, and features of the OpenMolcas program suite. These developments include novel wave function methods such as stochastic complete active space self-consistent field, density matrix renormalization group (DMRG) methods, and hybrid multiconfigurational wave function and density functional theory models. Some of these implementations include an array of additional options and functionalities. The paper proceeds and describes developments related to explorations of potential energy surfaces. Here we present methods for the optimization of conical intersections, the simulation of adiabatic and nonadiabatic molecular dynamics, and interfaces to tools for semiclassical and quantum mechanical nuclear dynamics. Furthermore, the Article describes features unique to simulations of spectroscopic and magnetic phenomena such as the exact semiclassical description of the interaction between light and matter, various X-ray processes, magnetic circular dichroism, and properties. Finally, the paper describes a number of built-in and add-on features to support the OpenMolcas platform with postcalculation analysis and visualization, a multiscale simulation option using frozen-density embedding theory, and new electronic and muonic basis sets.

Year:  2019        PMID: 31509407     DOI: 10.1021/acs.jctc.9b00532

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  60 in total

1.  Interpretation of photoelectron spectra of CoGen- (n = 4, 5) clusters by multiconfigurational RASPT2 calculations.

Authors:  Van Tan Tran; Quoc Tri Tran
Journal:  J Mol Model       Date:  2021-04-23       Impact factor: 1.810

2.  Relativistic four-component MRCISD+Q calculations of the six lowest valence states of molecular F[Formula: see text] anion including Breit interactions.

Authors:  Luiz Guilherme Machado de Macedo; Heracles Pereira Wanzeler; Gabriel Henrique Lange Dias; Ricardo Gargano
Journal:  J Mol Model       Date:  2021-07-26       Impact factor: 1.810

3.  Machine Learning for Electronically Excited States of Molecules.

Authors:  Julia Westermayr; Philipp Marquetand
Journal:  Chem Rev       Date:  2020-11-19       Impact factor: 60.622

4.  Light-Induced On/Off Switching of the Surfactant Character of the o-Cobaltabis(dicarbollide) Anion with No Covalent Bond Alteration.

Authors:  Abdelazim M A Abdelgawwad; Jewel Ann Maria Xavier; Daniel Roca-Sanjuán; Clara Viñas; Francesc Teixidor; Antonio Francés-Monerris
Journal:  Angew Chem Int Ed Engl       Date:  2021-10-26       Impact factor: 16.823

5.  The Chemistry of Mercury in the Stratosphere.

Authors:  Alfonso Saiz-Lopez; A Ulises Acuña; Anoop S Mahajan; Juan Z Dávalos; Wuhu Feng; Daniel Roca-Sanjuán; Javier Carmona-García; Carlos A Cuevas; Douglas E Kinnison; Juan Carlos Gómez Martín; Joseph S Francisco; John M C Plane
Journal:  Geophys Res Lett       Date:  2022-06-15       Impact factor: 5.576

6.  Spatial and Temporal Resolution of the Oxygen-Independent Photoinduced DNA Interstrand Cross-Linking by a Nitroimidazole Derivative.

Authors:  Abdelazim M A Abdelgawwad; Antonio Monari; Iñaki Tuñón; Antonio Francés-Monerris
Journal:  J Chem Inf Model       Date:  2022-06-30       Impact factor: 6.162

7.  Computational Comparison of Chemical and Isotopic Approaches to Control the Photoisomerization Dynamics of Light-Driven Molecular Motors.

Authors:  Jun Wang; Baswanth Oruganti; Bo Durbeej
Journal:  J Org Chem       Date:  2021-03-30       Impact factor: 4.354

8.  Influence of the crystal packing in singlet fission: one step beyond the gas phase approximation.

Authors:  Luis Enrique Aguilar Suarez; Coen de Graaf; Shirin Faraji
Journal:  Phys Chem Chem Phys       Date:  2021-07-07       Impact factor: 3.676

Review 9.  Frontiers in Multiscale Modeling of Photoreceptor Proteins.

Authors:  Maria-Andrea Mroginski; Suliman Adam; Gil S Amoyal; Avishai Barnoy; Ana-Nicoleta Bondar; Veniamin A Borin; Jonathan R Church; Tatiana Domratcheva; Bernd Ensing; Francesca Fanelli; Nicolas Ferré; Ofer Filiba; Laura Pedraza-González; Ronald González; Cristina E González-Espinoza; Rajiv K Kar; Lukas Kemmler; Seung Soo Kim; Jacob Kongsted; Anna I Krylov; Yigal Lahav; Michalis Lazaratos; Qays NasserEddin; Isabelle Navizet; Alexander Nemukhin; Massimo Olivucci; Jógvan Magnus Haugaard Olsen; Alberto Pérez de Alba Ortíz; Elisa Pieri; Aditya G Rao; Young Min Rhee; Niccolò Ricardi; Saumik Sen; Ilia A Solov'yov; Luca De Vico; Tomasz A Wesolowski; Christian Wiebeler; Xuchun Yang; Igor Schapiro
Journal:  Photochem Photobiol       Date:  2021-02-13       Impact factor: 3.521

10.  A study of cation-dependent inverse hydrogen bonds and magnetic exchange-couplings in lanthanacarborane complexes.

Authors:  Peng-Bo Jin; Qian-Cheng Luo; Yuan-Qi Zhai; Yi-Dian Wang; Yan Ma; Lei Tian; Xinliang Zhang; Chao Ke; Xu-Feng Zhang; Yi Lv; Yan-Zhen Zheng
Journal:  iScience       Date:  2021-06-19
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