Literature DB >> 31491384

Antibiotics-Driven Gut Microbiome Perturbation Alters Immunity to Vaccines in Humans.

Thomas Hagan1, Mario Cortese1, Nadine Rouphael2, Carolyn Boudreau3, Caitlin Linde3, Mohan S Maddur4, Jishnu Das3, Hong Wang4, Jenna Guthmiller5, Nai-Ying Zheng5, Min Huang5, Amit A Uphadhyay4, Luiz Gardinassi6, Caroline Petitdemange4, Michele Paine McCullough2, Sara Jo Johnson2, Kiran Gill4, Barbara Cervasi4, Jun Zou7, Alexis Bretin7, Megan Hahn8, Andrew T Gewirtz7, Steve E Bosinger4, Patrick C Wilson5, Shuzhao Li6, Galit Alter3, Surender Khurana8, Hana Golding8, Bali Pulendran9.   

Abstract

Emerging evidence indicates a central role for the microbiome in immunity. However, causal evidence in humans is sparse. Here, we administered broad-spectrum antibiotics to healthy adults prior and subsequent to seasonal influenza vaccination. Despite a 10,000-fold reduction in gut bacterial load and long-lasting diminution in bacterial diversity, antibody responses were not significantly affected. However, in a second trial of subjects with low pre-existing antibody titers, there was significant impairment in H1N1-specific neutralization and binding IgG1 and IgA responses. In addition, in both studies antibiotics treatment resulted in (1) enhanced inflammatory signatures (including AP-1/NR4A expression), observed previously in the elderly, and increased dendritic cell activation; (2) divergent metabolic trajectories, with a 1,000-fold reduction in serum secondary bile acids, which was highly correlated with AP-1/NR4A signaling and inflammasome activation. Multi-omics integration revealed significant associations between bacterial species and metabolic phenotypes, highlighting a key role for the microbiome in modulating human immunity.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  antibodies; bile acids; gene expression profiling; immunology; influenza; metabolomics; microbiota; systems biology; systems vaccinology; vaccines

Mesh:

Substances:

Year:  2019        PMID: 31491384      PMCID: PMC6750738          DOI: 10.1016/j.cell.2019.08.010

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  78 in total

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Review 4.  Bile salt biotransformations by human intestinal bacteria.

Authors:  Jason M Ridlon; Dae-Joong Kang; Phillip B Hylemon
Journal:  J Lipid Res       Date:  2005-11-18       Impact factor: 5.922

5.  The nuclear receptor PXR is a lithocholic acid sensor that protects against liver toxicity.

Authors:  J L Staudinger; B Goodwin; S A Jones; D Hawkins-Brown; K I MacKenzie; A LaTour; Y Liu; C D Klaassen; K K Brown; J Reinhard; T M Willson; B H Koller; S A Kliewer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-13       Impact factor: 11.205

6.  Regulation of macrophage inflammatory gene expression by the orphan nuclear receptor Nur77.

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7.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

8.  Vitamin D receptor as an intestinal bile acid sensor.

Authors:  Makoto Makishima; Timothy T Lu; Wen Xie; G Kerr Whitfield; Hideharu Domoto; Ronald M Evans; Mark R Haussler; David J Mangelsdorf
Journal:  Science       Date:  2002-05-17       Impact factor: 47.728

9.  A G protein-coupled receptor responsive to bile acids.

Authors:  Yuji Kawamata; Ryo Fujii; Masaki Hosoya; Masataka Harada; Hiromi Yoshida; Masanori Miwa; Shoji Fukusumi; Yugo Habata; Takashi Itoh; Yasushi Shintani; Shuji Hinuma; Yukio Fujisawa; Masahiko Fujino
Journal:  J Biol Chem       Date:  2003-01-10       Impact factor: 5.157

10.  TRANSFAC: transcriptional regulation, from patterns to profiles.

Authors:  V Matys; E Fricke; R Geffers; E Gössling; M Haubrock; R Hehl; K Hornischer; D Karas; A E Kel; O V Kel-Margoulis; D-U Kloos; S Land; B Lewicki-Potapov; H Michael; R Münch; I Reuter; S Rotert; H Saxel; M Scheer; S Thiele; E Wingender
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

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  149 in total

1.  Gut dysbiosis modulates the immune response to factor VIII in murine hemophilia A.

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Review 2.  Diversity and dynamism of IgA-microbiota interactions.

Authors:  Kelsey E Huus; Charisse Petersen; B Brett Finlay
Journal:  Nat Rev Immunol       Date:  2021-02-10       Impact factor: 53.106

3.  Tryptophan catabolism reflects disease activity in human tuberculosis.

Authors:  Jeffrey M Collins; Amnah Siddiqa; Dean P Jones; Ken Liu; Russell R Kempker; Azhar Nizam; N Sarita Shah; Nazir Ismail; Samuel G Ouma; Nestani Tukvadze; Shuzhao Li; Cheryl L Day; Jyothi Rengarajan; James Cm Brust; Neel R Gandhi; Joel D Ernst; Henry M Blumberg; Thomas R Ziegler
Journal:  JCI Insight       Date:  2020-05-21

4.  Early Signs of Gut Microbiome Aging: Biomarkers of Inflammation, Metabolism, and Macromolecular Damage in Young Adulthood.

Authors:  Audrey Renson; Kathleen Mullan Harris; Jennifer B Dowd; Lauren Gaydosh; Matthew B McQueen; Kenneth S Krauter; Michael Shannahan; Allison E Aiello
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2020-06-18       Impact factor: 6.053

Review 5.  Emerging computational tools and models for studying gut microbiota composition and function.

Authors:  Seo-Young Park; Arinzechukwu Ufondu; Kyongbum Lee; Arul Jayaraman
Journal:  Curr Opin Biotechnol       Date:  2020-11-25       Impact factor: 9.740

6.  How obesity could create problems for a COVID vaccine.

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7.  A Summary of the Fifth Annual Virology Education HIV Microbiome Workshop.

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Review 8.  Emerging technologies for systems vaccinology - multi-omics integration and single-cell (epi)genomic profiling.

Authors:  Florian Wimmers; Bali Pulendran
Journal:  Curr Opin Immunol       Date:  2020-06-03       Impact factor: 7.486

9.  α-Galactosylceramide: a potent immunomodulator produced by gut microbes.

Authors:  Rotonya M Carr
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10.  Human Vaccines & Immunotherapeutics: news.

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Journal:  Hum Vaccin Immunother       Date:  2019       Impact factor: 3.452

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