Literature DB >> 31460678

Bayesian additive regression trees and the General BART model.

Yaoyuan Vincent Tan1, Jason Roy1.   

Abstract

Bayesian additive regression trees (BART) is a flexible prediction model/machine learning approach that has gained widespread popularity in recent years. As BART becomes more mainstream, there is an increased need for a paper that walks readers through the details of BART, from what it is to why it works. This tutorial is aimed at providing such a resource. In addition to explaining the different components of BART using simple examples, we also discuss a framework, the General BART model that unifies some of the recent BART extensions, including semiparametric models, correlated outcomes, and statistical matching problems in surveys, and models with weaker distributional assumptions. By showing how these models fit into a single framework, we hope to demonstrate a simple way of applying BART to research problems that go beyond the original independent continuous or binary outcomes framework.
© 2019 John Wiley & Sons, Ltd.

Entities:  

Keywords:  Bayesian nonparametrics; Dirichlet process mixtures; machine learning; semiparametric models; spatial

Mesh:

Year:  2019        PMID: 31460678      PMCID: PMC6800811          DOI: 10.1002/sim.8347

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  20 in total

1.  Bayesian ensemble methods for survival prediction in gene expression data.

Authors:  Vinicius Bonato; Veerabhadran Baladandayuthapani; Bradley M Broom; Erik P Sulman; Kenneth D Aldape; Kim-Anh Do
Journal:  Bioinformatics       Date:  2010-12-08       Impact factor: 6.937

2.  Improved predictive mapping of indoor radon concentrations using ensemble regression trees based on automatic clustering of geological units.

Authors:  Georg Kropat; Francois Bochud; Michel Jaboyedoff; Jean-Pascal Laedermann; Christophe Murith; Martha Palacios Gruson; Sébastien Baechler
Journal:  J Environ Radioact       Date:  2015-05-28       Impact factor: 2.674

3.  Development of a real-time prediction model of driver behavior at intersections using kinematic time series data.

Authors:  Yaoyuan V Tan; Michael R Elliott; Carol A C Flannagan
Journal:  Accid Anal Prev       Date:  2017-07-20

4.  Subgroup finding via Bayesian additive regression trees.

Authors:  Siva Sivaganesan; Peter Müller; Bin Huang
Journal:  Stat Med       Date:  2017-03-09       Impact factor: 2.373

5.  Sequential BART for imputation of missing covariates.

Authors:  Dandan Xu; Michael J Daniels; Almut G Winterstein
Journal:  Biostatistics       Date:  2016-03-15       Impact factor: 5.899

6.  Bayesian Neural Networks for Selection of Drug Sensitive Genes.

Authors:  Faming Liang; Qizhai Li; Lei Zhou
Journal:  J Am Stat Assoc       Date:  2018-06-28       Impact factor: 5.033

7.  Nonparametric competing risks analysis using Bayesian Additive Regression Trees.

Authors:  Rodney Sparapani; Brent R Logan; Robert E McCulloch; Purushottam W Laud
Journal:  Stat Methods Med Res       Date:  2019-01-07       Impact factor: 3.021

8.  Estimating Individual Treatment Effect in Observational Data Using Random Forest Methods.

Authors:  Min Lu; Saad Sadiq; Daniel J Feaster; Hemant Ishwaran
Journal:  J Comput Graph Stat       Date:  2018-02-01       Impact factor: 2.302

9.  Multiplicity-adjusted semiparametric benefiting subgroup identification in clinical trials.

Authors:  Patrick M Schnell; Peter Müller; Qi Tang; Bradley P Carlin
Journal:  Clin Trials       Date:  2017-10-16       Impact factor: 2.486

10.  Non-parametric recurrent events analysis with BART and an application to the hospital admissions of patients with diabetes.

Authors:  Rodney A Sparapani; Lisa E Rein; Sergey S Tarima; Tourette A Jackson; John R Meurer
Journal:  Biostatistics       Date:  2020-01-01       Impact factor: 5.279

View more
  8 in total

1.  Causal Effects of Motor Control on Gait Kinematics After Orthopedic Surgery in Cerebral Palsy: A Machine-Learning Approach.

Authors:  Katherine M Steele; Michael H Schwartz
Journal:  Front Hum Neurosci       Date:  2022-06-03       Impact factor: 3.473

2.  Bayesian semi-parametric G-computation for causal inference in a cohort study with MNAR dropout and death.

Authors:  Maria Josefsson; Michael J Daniels
Journal:  J R Stat Soc Ser C Appl Stat       Date:  2021-01-06       Impact factor: 1.864

3.  Multiple imputation procedures for estimating causal effects with multiple treatments with application to the comparison of healthcare providers.

Authors:  Gabriella C Silva; Roee Gutman
Journal:  Stat Med       Date:  2021-11-02       Impact factor: 2.373

4.  Estimating heterogeneous survival treatment effects of lung cancer screening approaches: A causal machine learning analysis.

Authors:  Liangyuan Hu; Jung-Yi Lin; Keith Sigel; Minal Kale
Journal:  Ann Epidemiol       Date:  2021-06-23       Impact factor: 6.996

5.  Optimal individualized decision rules from a multi-arm trial: A comparison of methods and an application to tailoring inter-donation intervals among blood donors in the UK.

Authors:  Yuejia Xu; Angela M Wood; Michael J Sweeting; David J Roberts; Brian Dm Tom
Journal:  Stat Methods Med Res       Date:  2020-05-08       Impact factor: 3.021

6.  An Efficient and Effective Model to Handle Missing Data in Classification.

Authors:  Kamran Mehrabani-Zeinabad; Marziyeh Doostfatemeh; Seyyed Mohammad Taghi Ayatollahi
Journal:  Biomed Res Int       Date:  2020-11-25       Impact factor: 3.411

7.  Revealing Physiochemical Factors and Zooplankton Influencing Microcystis Bloom Toxicity in a Large-Shallow Lake Using Bayesian Machine Learning.

Authors:  Xiaoxiao Wang; Lan Wang; Mingsheng Shang; Lirong Song; Kun Shan
Journal:  Toxins (Basel)       Date:  2022-08-02       Impact factor: 5.075

8.  Differentiation of Cerebral Neoplasms with Vessel Size Imaging (VSI).

Authors:  Asmaa Foda; Elias Kellner; Asanka Gunawardana; Xiang Gao; Martin Janz; Anna Kufner; Ahmed A Khalil; Rohat Geran; Ralf Mekle; Jochen B Fiebach; Ivana Galinovic
Journal:  Clin Neuroradiol       Date:  2021-12-23       Impact factor: 3.649

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.