Literature DB >> 34157399

Estimating heterogeneous survival treatment effects of lung cancer screening approaches: A causal machine learning analysis.

Liangyuan Hu1, Jung-Yi Lin2, Keith Sigel3, Minal Kale3.   

Abstract

The National Lung Screening Trial (NLST) found that low-dose computed tomography (LDCT) screening provided lung cancer (LC) mortality benefit compared to chest radiography (CXR). Considerable research concerns identifying the differential treatment effects that may exist in certain subpopulations. We shed light on several important issues in existing research and highlight the need for further investigation of the heterogeneous comparative effect of LDCT versus CXR, using more flexible and rigorous statistical approaches. We used a high-performance Bayesian machine learning approach designed for censored survival data, accelerated failure time Bayesian additive regression trees model (AFT-BART), to flexibly capture the relationships between the failure time and predictors. We then used the counterfactual framework to draw Markov chain Monte Carlo samples of the individual treatment effect for each participant. Using these posterior samples, we explored the possible treatment effect heterogeneity via a stepwise binary tree approach. When re-analyzed with AFT-BART, LDCT did not have a statistically significant LC or overall mortality benefit compared to CXR. The Asian and Black (particularly those with pack-year ≥ 37 years and without emphysema) NLST population were shown to have enhanced overall mortality benefit from LDCT than the population average. Although inconclusive for LC mortality benefit, Asians, Blacks and Whites with history of chronic obstructive pulmonary disease showed a small trend towards benefit from LDCT. Causal inference with flexible machine learning modeling can provide valuable knowledge for informing treatment decision and planning targeted clinical trials emphasizing personalized medicine approaches.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bayesian machine learning; Causal inference; Individualized screening; Lung cancer prevention

Mesh:

Year:  2021        PMID: 34157399      PMCID: PMC8463451          DOI: 10.1016/j.annepidem.2021.06.008

Source DB:  PubMed          Journal:  Ann Epidemiol        ISSN: 1047-2797            Impact factor:   6.996


  32 in total

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Authors:  Michele Retrouvey; Zeal Patel; Sarah Shaves
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2.  Reduced lung-cancer mortality with low-dose computed tomographic screening.

Authors:  Denise R Aberle; Amanda M Adams; Christine D Berg; William C Black; Jonathan D Clapp; Richard M Fagerstrom; Ilana F Gareen; Constantine Gatsonis; Pamela M Marcus; JoRean D Sicks
Journal:  N Engl J Med       Date:  2011-06-29       Impact factor: 91.245

Review 3.  Lung cancer LDCT screening and mortality reduction - evidence, pitfalls and future perspectives.

Authors:  Matthijs Oudkerk; ShiYuan Liu; Marjolein A Heuvelmans; Joan E Walter; John K Field
Journal:  Nat Rev Clin Oncol       Date:  2020-10-12       Impact factor: 66.675

4.  Lung Cancer Incidence and Mortality with Extended Follow-up in the National Lung Screening Trial.

Authors: 
Journal:  J Thorac Oncol       Date:  2019-06-28       Impact factor: 15.609

5.  The UK Lung Cancer Screening Trial: a pilot randomised controlled trial of low-dose computed tomography screening for the early detection of lung cancer.

Authors:  John K Field; Stephen W Duffy; David R Baldwin; Kate E Brain; Anand Devaraj; Tim Eisen; Beverley A Green; John A Holemans; Terry Kavanagh; Keith M Kerr; Martin Ledson; Kate J Lifford; Fiona E McRonald; Arjun Nair; Richard D Page; Mahesh Kb Parmar; Robert C Rintoul; Nicholas Screaton; Nicholas J Wald; David Weller; David K Whynes; Paula R Williamson; Ghasem Yadegarfar; David M Hansell
Journal:  Health Technol Assess       Date:  2016-05       Impact factor: 4.014

6.  Modeling the causal effect of treatment initiation time on survival: Application to HIV/TB co-infection.

Authors:  Liangyuan Hu; Joseph W Hogan; Ann W Mwangi; Abraham Siika
Journal:  Biometrics       Date:  2017-09-28       Impact factor: 2.571

7.  Effect of Aspirin on Cardiovascular Events and Bleeding in the Healthy Elderly.

Authors:  John J McNeil; Rory Wolfe; Robyn L Woods; Andrew M Tonkin; Geoffrey A Donnan; Mark R Nelson; Christopher M Reid; Jessica E Lockery; Brenda Kirpach; Elsdon Storey; Raj C Shah; Jeff D Williamson; Karen L Margolis; Michael E Ernst; Walter P Abhayaratna; Nigel Stocks; Sharyn M Fitzgerald; Suzanne G Orchard; Ruth E Trevaks; Lawrence J Beilin; Colin I Johnston; Joanne Ryan; Barbara Radziszewska; Michael Jelinek; Mobin Malik; Charles B Eaton; Donna Brauer; Geoff Cloud; Erica M Wood; Suzanne E Mahady; Suzanne Satterfield; Richard Grimm; Anne M Murray
Journal:  N Engl J Med       Date:  2018-09-16       Impact factor: 91.245

8.  Detecting Heterogeneous Treatment Effects to Guide Personalized Blood Pressure Treatment: A Modeling Study of Randomized Clinical Trials.

Authors:  Sanjay Basu; Jeremy B Sussman; Rod A Hayward
Journal:  Ann Intern Med       Date:  2017-01-03       Impact factor: 25.391

9.  Lung cancer incidence and mortality in National Lung Screening Trial participants who underwent low-dose CT prevalence screening: a retrospective cohort analysis of a randomised, multicentre, diagnostic screening trial.

Authors:  Edward F Patz; Erin Greco; Constantine Gatsonis; Paul Pinsky; Barnett S Kramer; Denise R Aberle
Journal:  Lancet Oncol       Date:  2016-03-18       Impact factor: 41.316

10.  A flexible, interpretable framework for assessing sensitivity to unmeasured confounding.

Authors:  Vincent Dorie; Masataka Harada; Nicole Bohme Carnegie; Jennifer Hill
Journal:  Stat Med       Date:  2016-05-03       Impact factor: 2.373

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  2 in total

1.  A flexible approach for variable selection in large-scale healthcare database studies with missing covariate and outcome data.

Authors:  Jung-Yi Joyce Lin; Liangyuan Hu; Chuyue Huang; Ji Jiayi; Steven Lawrence; Usha Govindarajulu
Journal:  BMC Med Res Methodol       Date:  2022-05-04       Impact factor: 4.612

2.  Protocol for the development of a reporting guideline for causal and counterfactual prediction models in biomedicine.

Authors:  Jie Xu; Yi Guo; Fei Wang; Hua Xu; Robert Lucero; Jiang Bian; Mattia Prosperi
Journal:  BMJ Open       Date:  2022-06-20       Impact factor: 3.006

  2 in total

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