Literature DB >> 29706752

Estimating Individual Treatment Effect in Observational Data Using Random Forest Methods.

Min Lu1, Saad Sadiq2, Daniel J Feaster1, Hemant Ishwaran1.   

Abstract

Estimation of individual treatment effect in observational data is complicated due to the challenges of confounding and selection bias. A useful inferential framework to address this is the counterfactual (potential outcomes) model, which takes the hypothetical stance of asking what if an individual had received both treatments. Making use of random forests (RF) within the counterfactual framework we estimate individual treatment effects by directly modeling the response. We find that accurate estimation of individual treatment effects is possible even in complex heterogenous settings but that the type of RF approach plays an important role in accuracy. Methods designed to be adaptive to confounding, when used in parallel with out-of-sample estimation, do best. One method found to be especially promising is counterfactual synthetic forests. We illustrate this new methodology by applying it to a large comparative effectiveness trial, Project Aware, to explore the role drug use plays in sexual risk. The analysis reveals important connections between risky behavior, drug usage, and sexual risk.

Entities:  

Keywords:  Counterfactual model; Individual treatment effect (ITE); Propensity score; Synthetic forests; Treatment heterogeneity

Year:  2018        PMID: 29706752      PMCID: PMC5920646          DOI: 10.1080/10618600.2017.1356325

Source DB:  PubMed          Journal:  J Comput Graph Stat        ISSN: 1061-8600            Impact factor:   2.302


  12 in total

1.  Stratification and weighting via the propensity score in estimation of causal treatment effects: a comparative study.

Authors:  Jared K Lunceford; Marie Davidian
Journal:  Stat Med       Date:  2004-10-15       Impact factor: 2.373

2.  Scientific evidence underlying the ACC/AHA clinical practice guidelines.

Authors:  Pierluigi Tricoci; Joseph M Allen; Judith M Kramer; Robert M Califf; Sidney C Smith
Journal:  JAMA       Date:  2009-02-25       Impact factor: 56.272

3.  Random Forest Missing Data Algorithms.

Authors:  Fei Tang; Hemant Ishwaran
Journal:  Stat Anal Data Min       Date:  2017-06-13       Impact factor: 1.051

4.  Subgroup identification from randomized clinical trial data.

Authors:  Jared C Foster; Jeremy M G Taylor; Stephen J Ruberg
Journal:  Stat Med       Date:  2011-08-04       Impact factor: 2.373

5.  Penalized regression procedures for variable selection in the potential outcomes framework.

Authors:  Debashis Ghosh; Yeying Zhu; Donna L Coffman
Journal:  Stat Med       Date:  2015-01-28       Impact factor: 2.373

6.  Effect of risk-reduction counseling with rapid HIV testing on risk of acquiring sexually transmitted infections: the AWARE randomized clinical trial.

Authors:  Lisa R Metsch; Daniel J Feaster; Lauren Gooden; Bruce R Schackman; Tim Matheson; Moupali Das; Matthew R Golden; Shannon Huffaker; Louise F Haynes; Susan Tross; C Kevin Malotte; Antoine Douaihy; P Todd Korthuis; Wayne A Duffus; Sarah Henn; Robert Bolan; Susan S Philip; Jose G Castro; Pedro C Castellon; Gayle McLaughlin; Raul N Mandler; Bernard Branson; Grant N Colfax
Journal:  JAMA       Date:  2013-10-23       Impact factor: 56.272

7.  Self-Reported HIV and HCV Screening Rates and Serostatus Among Substance Abuse Treatment Patients.

Authors:  Diana Hernández; Daniel J Feaster; Lauren Gooden; Antoine Douaihy; Raul Mandler; Sarah J Erickson; Tiffany Kyle; Louise Haynes; Robert Schwartz; Moupali Das; Lisa Metsch
Journal:  AIDS Behav       Date:  2016-01

8.  Synthetic learning machines.

Authors:  Hemant Ishwaran; James D Malley
Journal:  BioData Min       Date:  2014-12-18       Impact factor: 2.522

9.  Identification of predicted individual treatment effects in randomized clinical trials.

Authors:  Andrea Lamont; Michael D Lyons; Thomas Jaki; Elizabeth Stuart; Daniel J Feaster; Kukatharmini Tharmaratnam; Daniel Oberski; Hemant Ishwaran; Dawn K Wilson; M Lee Van Horn
Journal:  Stat Methods Med Res       Date:  2016-03-17       Impact factor: 3.021

10.  Risk estimation using probability machines.

Authors:  Abhijit Dasgupta; Silke Szymczak; Jason H Moore; Joan E Bailey-Wilson; James D Malley
Journal:  BioData Min       Date:  2014-03-01       Impact factor: 2.522

View more
  20 in total

1.  Bayesian additive regression trees and the General BART model.

Authors:  Yaoyuan Vincent Tan; Jason Roy
Journal:  Stat Med       Date:  2019-08-28       Impact factor: 2.373

2.  Precision Surgical Therapy for Adenocarcinoma of the Esophagus and Esophagogastric Junction.

Authors:  Thomas W Rice; Min Lu; Hemant Ishwaran; Eugene H Blackstone
Journal:  J Thorac Oncol       Date:  2019-08-20       Impact factor: 15.609

3.  Cys34 Adductomics Links Colorectal Cancer with the Gut Microbiota and Redox Biology.

Authors:  Hasmik Grigoryan; Courtney Schiffman; Marc J Gunter; Alessio Naccarati; Silvia Polidoro; Sonia Dagnino; Sandrine Dudoit; Paolo Vineis; Stephen M Rappaport
Journal:  Cancer Res       Date:  2019-10-22       Impact factor: 12.701

4.  Variables of importance in the Scientific Registry of Transplant Recipients database predictive of heart transplant waitlist mortality.

Authors:  Eileen M Hsich; Lucy Thuita; Dennis M McNamara; Joseph G Rogers; Maryam Valapour; Lee R Goldberg; Clyde W Yancy; Eugene H Blackstone; Hemant Ishwaran
Journal:  Am J Transplant       Date:  2019-02-13       Impact factor: 8.086

5.  Metabolomics of neonatal blood spots reveal distinct phenotypes of pediatric acute lymphoblastic leukemia and potential effects of early-life nutrition.

Authors:  Lauren M Petrick; Courtney Schiffman; William M B Edmands; Yukiko Yano; Kelsi Perttula; Todd Whitehead; Catherine Metayer; Craig E Wheelock; Manish Arora; Hasmik Grigoryan; Henrik Carlsson; Sandrine Dudoit; Stephen M Rappaport
Journal:  Cancer Lett       Date:  2019-03-20       Impact factor: 8.679

6.  An outcome model approach to transporting a randomized controlled trial results to a target population.

Authors:  Benjamin A Goldstein; Matthew Phelan; Neha J Pagidipati; Rury R Holman; Michael J Pencina; Elizabeth A Stuart
Journal:  J Am Med Inform Assoc       Date:  2019-05-01       Impact factor: 4.497

7.  Value of Lymphadenectomy in Patients Receiving Neoadjuvant Therapy for Esophageal Adenocarcinoma.

Authors:  Siva Raja; Thomas W Rice; Sudish C Murthy; Usman Ahmad; Marie E Semple; Eugene H Blackstone; Hemant Ishwaran
Journal:  Ann Surg       Date:  2021-10-01       Impact factor: 12.969

8.  Estimation and Validation of Ratio-based Conditional Average Treatment Effects Using Observational Data.

Authors:  Steve Yadlowsky; Fabio Pellegrini; Federica Lionetto; Stefan Braune; Lu Tian
Journal:  J Am Stat Assoc       Date:  2020-07-07       Impact factor: 5.033

9.  Bagged random causal networks for interventional queries on observational biomedical datasets.

Authors:  Mattia Prosperi; Yi Guo; Jiang Bian
Journal:  J Biomed Inform       Date:  2021-02-04       Impact factor: 6.317

10.  Predicting mortality in hemodialysis patients using machine learning analysis.

Authors:  Victoria Garcia-Montemayor; Alejandro Martin-Malo; Carlo Barbieri; Francesco Bellocchio; Sagrario Soriano; Victoria Pendon-Ruiz de Mier; Ignacio R Molina; Pedro Aljama; Mariano Rodriguez
Journal:  Clin Kidney J       Date:  2020-08-11
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.