| Literature DB >> 31459961 |
Kavita Bhagat1, Jyoti Bhagat1, Manish Kumar Gupta2, Jatinder Vir Singh1, Harmandeep Kaur Gulati1, Atamjit Singh1, Kamalpreet Kaur1, Gurinder Kaur1, Shally Sharma1, Abhineet Rana3, Harbinder Singh1, Sahil Sharma1, Preet Mohinder Singh Bedi1.
Abstract
Keeping in view various pharmacological attributes of indole and coumarin derivatives, a new series of indolindione-coumarin molecular hybrids was rationally designed and synthesized. All synthesized hybrid molecules were evaluated for their antimicrobial potential against Gram-negative bacterial strains (Escherichia coli and Salmonella enterica), Gram-positive bacterial strains (Staphylococcus aureus and Mycobacterium smegmatis), and four fungal strains (Candida albicans, Alternaria mali, Penicillium sp., and Fusarium oxysporum) by using the agar gel diffusion method. Among all synthetics, compounds K-1 and K-2 were found to be the best antimicrobial agents with the minimum inhibitory concentration values of 30 and 312 μg/mL, against Penicillium sp. and S. aureus, respectively. The biological data revealed some interesting facts about the structure-activity relationship which state that the electronic environment on the indolinedione moiety and carbon chain length between indolinedione and triazole moieties considerably affect the antimicrobial potential of the synthesized hybrids. Various types of binding interactions of K-2 within the active site of S. aureus dihydrofolate reductase were also streamlined by molecular modeling studies, which revealed the possible mechanism for potent antibacterial activity of the compound.Entities:
Year: 2019 PMID: 31459961 PMCID: PMC6648594 DOI: 10.1021/acsomega.8b02481
Source DB: PubMed Journal: ACS Omega ISSN: 2470-1343
Figure 1Recently reported hybrid molecules as antimicrobial agents.
Figure 2Variously reported triazole-linked hybrid molecules as antimicrobial agents.
Figure 3Design strategy of indolinedione–coumarin hybrid molecules.
Scheme 1Synthesis of Indolinedione–Coumarin Hybrids
Reagents and conditions: (a) K2CO3, DMF, 2 h, stir, rt; (b) NaN3, DMF, 1 h, stir, rt; (c) propargyl bromide, K2CO3, DMF, 2 h, stir, rt; and (d) sodium ascorbate, CuSO4, DMF, 15 min, rt.
Figure 4(a) Zone of inhibition exhibited by compound K-2 against S. aureus; (b) negative control colistin & DMSO; (c) maximum zone of inhibition at a concentration of 30 μg/mL with negative control fluconazole and DMSO; (d) effect of different concentrations 15, 7.5, 3.75, and 1.87 μg/mL of compound K-1 against Penicillium sp.
Results of the Antimicrobial Activitya,b
| zone of inhibition (cm) | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| s.no | sample | ||||||||
| 1 | 1.3 ± 0.2 | 0.5 ± 0.2 | 2.5 ± 0.2 | ||||||
| 2 | 1.3 ± 0.2 | 2.5 ± 0.5 | 0.4 ± 0.1 | 1.8 ± 0.5 | |||||
| 3 | 1.1 ± 0.1 | 2.1 ± 0.4 | 0.5 ± 0.1 | 1.0 ± 0.2 | |||||
| 4 | 0.9 ± 0.1 | 1.7 ± 0.6 | 0.5 ± 0.1 | 1.6 ± 0.6 | 0.3 ± 0.2 | ||||
| 5 | 1.1 ± 0.2 | 1.2 ± 0.6 | 0.3 ± 0.2 | 1.8 ± 0.4 | 0.6 ± 0.1 | ||||
| 6 | 1.1 ± 0.2 | 0.9 ± 0.4 | 0.3 ± 0.2 | 1.4 ± 0.3 | |||||
| 7 | 0.8 ± 0.1 | 0.6 ± 0.2 | 1.2 ± 0.6 | 1.0 ± 0.1 | |||||
| 8 | 1.2 ± 0.1 | 1.7 ± 0.4 | 0.7 ± 0.2 | ||||||
| 9 | 1.2 ± 0.2 | 0.8 ± 0.4 | 0.4 ± 0.2 | 0.6 ± 0.2 | 1.3 ± 0.6 | ||||
| 10 | 1.2 ± 0.1 | 0.7 ± 0.3 | 0.9 ± 0.1 | 1.5 ± 0.4 | |||||
| 11 | 0.4 ± 0.1 | 0.7 ± 0.1 | 1.0 ± 0.4 | 0.5 ± 0.2 | |||||
| 12 | 1.1 ± 0.3 | 0.5 ± 0.1 | |||||||
| 13 | 0.7 ± 0.1 | 0.2 ± 0.1 | 0.6 ± 0.1 | 0.2 ± 0.03 | |||||
| 14 | 0.5 ± 0.1 | 0.3 ± 0.1 | 0.1 ± 0.04 | ||||||
| 15 | 1.1 ± 0.2 | 0.5 ± 0.1 | 0.2 ± 0.1 | ||||||
| 16 | 0.6 ± 0.1 | 0.4 ± 0.2 | 0.3 ± 0.2 | ||||||
| 17 | 0.5 ± 0.2 | 0.3 ± 0.2 | 0.5 ± 0.1 | ||||||
| 18 | 1.1 ± 0.1 | 0.7 ± 0.1 | 0.6 ± 0.1 | ||||||
| 19 | 0.7 ± 0.2 | ||||||||
| 20 | 0.4 ± 0.1 | 0.6 ± 0.1 | |||||||
| 21 | 0.5 ± 0.1 | 0.4 ± 0.1 | |||||||
Zones of inhibitions (cm) were measured by using agar gel diffusion assay. The results are the mean ± SD of three replicate experiments.
No zone of inhibition observed.
Figure 5Structure–activity relationship of hybrid molecules.
Figure 6(a) Docking conformation of K-2 at the active site of DHFR (hydrogens which are involved in H-bond interactions are shown); (b) two-dimensional depiction of various residues involved in D–R interactions.
In Silico ADME Properties of Active Hybrid Molecules
| absorption | distribution | |||||
|---|---|---|---|---|---|---|
| compound | human intestinal absorption (HIA) % | in vitro Caco-2 cell permeability (nm/s) | in vitro MDCK cell permeability (nm/s) | in vitro skin permeability (log | in vitro plasma protein binding (%) | in vivo blood brain barrier penetration (C.brain/C.blood) |
| 99.64 | 20.78 | 8.06 | –4.27 | 91.10 | 0.06 | |
| 99.65 | 21.29 | 3.01 | –4.46 | 91.83 | 0.07 | |
| 99.57 | 21.23 | 0.92 | –4.31 | 96.85 | 0.08 | |
| 98.10 | 21.45 | 0.04 | –3.87 | 97.40 | 0.03 | |
| 97.95 | 27.26 | 0.45 | –4.26 | 98.67 | 0.07 | |
| 92.61 | 10.54 | 2.15 | –4.15 | 99.18 | 0.05 | |
| 99.47 | 22.52 | 2.52 | –4.38 | 90.96 | 0.06 | |
| 99.71 | 23.58 | 5.33 | –4.23 | 92.21 | 0.09 | |
| 99.72 | 22.17 | 3.51 | –4.44 | 92.68 | 0.10 | |
| 99.44 | 21.31 | 0.87 | –4.27 | 97.85 | 0.13 | |
Physicochemical Parameters of Active Hybrid Molecules
| compound | molecular weight | no. of H-bond donors | no. of H-bond acceptors | molar refractivity | log | no. of Lipinski violation |
|---|---|---|---|---|---|---|
| 416 | 0 | 6 | 121.16 | 1.64 | 0 | |
| 434 | 0 | 6 | 121.38 | 1.78 | 0 | |
| 450 | 0 | 6 | 125.97 | 2.24 | 0 | |
| 495 | 0 | 6 | 128.79 | 2.41 | 0 | |
| 542 | 0 | 6 | 134.53 | 2.57 | 2 | |
| 461 | 0 | 8 | 128.49 | 1.58 | 0 | |
| 446 | 0 | 7 | 127.63 | 1.48 | 0 | |
| 430 | 0 | 6 | 126.03 | 1.70 | 0 | |
| 448 | 0 | 6 | 126.25 | 1.84 | 0 | |
| 464 | 0 | 6 | 130.83 | 2.30 | 0 |