Literature DB >> 31451767

A five-level classification system for proteoform identifications.

Lloyd M Smith1, Paul M Thomas2,3, Michael R Shortreed4, Leah V Schaffer4, Ryan T Fellers2,3, Richard D LeDuc2,3, Trisha Tucholski4, Ying Ge5, Jeffrey N Agar6, Lissa C Anderson7, Julia Chamot-Rooke8, Joseph Gault9, Joseph A Loo10, Ljiljana Paša-Tolić11, Carol V Robinson9, Hartmut Schlüter12, Yury O Tsybin13, Marta Vilaseca14, Juan Antonio Vizcaíno15, Paul O Danis16, Neil L Kelleher17,18.   

Abstract

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Year:  2019        PMID： 31451767      PMCID： PMC6857706          DOI： 10.1038/s41592-019-0573-x

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  17 in total

1.  Thorough Performance Evaluation of 213 nm Ultraviolet Photodissociation for Top-down Proteomics.

Authors:  Luca Fornelli; Kristina Srzentić; Timothy K Toby; Peter F Doubleday; Romain Huguet; Christopher Mullen; Rafael D Melani; Henrique Dos Santos Seckler; Caroline J DeHart; Chad R Weisbrod; Kenneth R Durbin; Joseph B Greer; Bryan P Early; Ryan T Fellers; Vlad Zabrouskov; Paul M Thomas; Philip D Compton; Neil L Kelleher
Journal:  Mol Cell Proteomics       Date:  2019-12-30       Impact factor: 5.911

2.  Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data.

Authors:  Leah V Schaffer; Robert J Millikin; Michael R Shortreed; Mark Scalf; Lloyd M Smith
Journal:  J Proteome Res       Date:  2020-07-10       Impact factor: 4.466

3.  Internal Fragment Ions Disambiguate and Increase Identifications in Top-Down Proteomics.

Authors:  Zach Rolfs; Lloyd M Smith
Journal:  J Proteome Res       Date:  2021-11-05       Impact factor: 4.466

4.  Ion Activation Methods for Peptides and Proteins.

Authors:  Luis A Macias; Inês C Santos; Jennifer S Brodbelt
Journal:  Anal Chem       Date:  2019-11-12       Impact factor: 6.986

5.  MASH Explorer: A Universal Software Environment for Top-Down Proteomics.

Authors:  Zhijie Wu; David S Roberts; Jake A Melby; Kent Wenger; Molly Wetzel; Yiwen Gu; Sudharshanan Govindaraj Ramanathan; Elizabeth F Bayne; Xiaowen Liu; Ruixiang Sun; Irene M Ong; Sean J McIlwain; Ying Ge
Journal:  J Proteome Res       Date:  2020-08-24       Impact factor: 4.466

6.  Top-Down Proteomics of Endogenous Membrane Proteins Enabled by Cloud Point Enrichment and Multidimensional Liquid Chromatography-Mass Spectrometry.

Authors:  Kyle A Brown; Trisha Tucholski; Andrew J Alpert; Christian Eken; Lucas Wesemann; Andreas Kyrvasilis; Song Jin; Ying Ge
Journal:  Anal Chem       Date:  2020-11-24       Impact factor: 6.986

Review 7.  Fourier-transform ion cyclotron resonance mass spectrometry for characterizing proteoforms.

Authors:  Trisha Tucholski; Ying Ge
Journal:  Mass Spectrom Rev       Date:  2020-09-07       Impact factor: 10.946

8.  Automated Assignment of Proteoform Classification Levels.

Authors:  Zach Rolfs; Lloyd M Smith
Journal:  J Proteome Res       Date:  2021-06-28       Impact factor: 5.370

9.  Construction of Human Proteoform Families from 21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Top-Down Proteomic Data.

Authors:  Leah V Schaffer; Lissa C Anderson; David S Butcher; Michael R Shortreed; Rachel M Miller; Caitlin Pavelec; Lloyd M Smith
Journal:  J Proteome Res       Date:  2020-10-19       Impact factor: 4.466

10.  Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry.

Authors:  Kristina Srzentić; Luca Fornelli; Yury O Tsybin; Joseph A Loo; Henrique Seckler; Jeffrey N Agar; Lissa C Anderson; Dina L Bai; Alain Beck; Jennifer S Brodbelt; Yuri E M van der Burgt; Julia Chamot-Rooke; Sneha Chatterjee; Yunqiu Chen; David J Clarke; Paul O Danis; Jolene K Diedrich; Robert A D'Ippolito; Mathieu Dupré; Natalia Gasilova; Ying Ge; Young Ah Goo; David R Goodlett; Sylvester Greer; Kim F Haselmann; Lidong He; Christopher L Hendrickson; Joshua D Hinkle; Matthew V Holt; Sam Hughes; Donald F Hunt; Neil L Kelleher; Anton N Kozhinov; Ziqing Lin; Christian Malosse; Alan G Marshall; Laure Menin; Robert J Millikin; Konstantin O Nagornov; Simone Nicolardi; Ljiljana Paša-Tolić; Stuart Pengelley; Neil R Quebbemann; Anja Resemann; Wendy Sandoval; Richa Sarin; Nicholas D Schmitt; Jeffrey Shabanowitz; Jared B Shaw; Michael R Shortreed; Lloyd M Smith; Frank Sobott; Detlev Suckau; Timothy Toby; Chad R Weisbrod; Norelle C Wildburger; John R Yates; Sung Hwan Yoon; Nicolas L Young; Mowei Zhou
Journal:  J Am Soc Mass Spectrom       Date:  2020-08-19       Impact factor: 3.109
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