Literature DB >> 31444807

Global identifiability of latent class models with applications to diagnostic test accuracy studies: A Gröbner basis approach.

Rui Duan1, Ming Cao2, Yang Ning3, Mingfu Zhu4, Bin Zhang5, Aidan McDermott6, Haitao Chu7, Xiaohua Zhou8, Jason H Moore1, Joseph G Ibrahim9, Daniel O Scharfstein6, Yong Chen1.   

Abstract

Identifiability of statistical models is a fundamental regularity condition that is required for valid statistical inference. Investigation of model identifiability is mathematically challenging for complex models such as latent class models. Jones et al. used Goodman's technique to investigate the identifiability of latent class models with applications to diagnostic tests in the absence of a gold standard test. The tool they used was based on examining the singularity of the Jacobian or the Fisher information matrix, in order to obtain insights into local identifiability (ie, there exists a neighborhood of a parameter such that no other parameter in the neighborhood leads to the same probability distribution as the parameter). In this paper, we investigate a stronger condition: global identifiability (ie, no two parameters in the parameter space give rise to the same probability distribution), by introducing a powerful mathematical tool from computational algebra: the Gröbner basis. With several existing well-known examples, we argue that the Gröbner basis method is easy to implement and powerful to study global identifiability of latent class models, and is an attractive alternative to the information matrix analysis by Rothenberg and the Jacobian analysis by Goodman and Jones et al.
© 2019 The International Biometric Society.

Entities:  

Keywords:  computational algebraic geometry; latent class models; polynomial equations; survey sampling

Year:  2019        PMID: 31444807      PMCID: PMC7036323          DOI: 10.1111/biom.13133

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   2.571


  22 in total

1.  Screening without a "gold standard": the Hui-Walter paradigm revisited.

Authors:  W O Johnson; J L Gastwirth; L M Pearson
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2.  Modelling risk when binary outcomes are subject to error.

Authors:  Pat McInturff; Wesley O Johnson; David Cowling; Ian A Gardner
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3.  The identifiability of tree topology for phylogenetic models, including covarion and mixture models.

Authors:  Elizabeth S Allman; John A Rhodes
Journal:  J Comput Biol       Date:  2006-06       Impact factor: 1.479

4.  Insights into latent class analysis of diagnostic test performance.

Authors:  Margaret Sullivan Pepe; Holly Janes
Journal:  Biostatistics       Date:  2006-11-03       Impact factor: 5.899

5.  Bayesian meta-analysis of the accuracy of a test for tuberculous pleuritis in the absence of a gold standard reference.

Authors:  Nandini Dendukuri; Ian Schiller; Lawrence Joseph; Madhukar Pai
Journal:  Biometrics       Date:  2012-05-08       Impact factor: 2.571

6.  Verification problems in diagnostic accuracy studies: consequences and solutions.

Authors:  Joris A H de Groot; Patrick M M Bossuyt; Johannes B Reitsma; Anne W S Rutjes; Nandini Dendukuri; Kristel J M Janssen; Karel G M Moons
Journal:  BMJ       Date:  2011-08-02

7.  Latent variable modeling of diagnostic accuracy.

Authors:  I Yang; M P Becker
Journal:  Biometrics       Date:  1997-09       Impact factor: 2.571

Review 8.  Statistical methods for multivariate meta-analysis of diagnostic tests: An overview and tutorial.

Authors:  Xiaoye Ma; Lei Nie; Stephen R Cole; Haitao Chu
Journal:  Stat Methods Med Res       Date:  2013-06-26       Impact factor: 3.021

9.  Bayesian estimation of disease prevalence and the parameters of diagnostic tests in the absence of a gold standard.

Authors:  L Joseph; T W Gyorkos; L Coupal
Journal:  Am J Epidemiol       Date:  1995-02-01       Impact factor: 4.897

10.  Evaluation of the accuracy of diagnostic scales for a syndrome in Chinese medicine in the absence of a gold standard.

Authors:  Xiao Nan Wang; Vanessa Zhou; Qiang Liu; Ying Gao; Xiao-Hua Zhou
Journal:  Chin Med       Date:  2016-07-28       Impact factor: 5.455

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  2 in total

1.  Errors in multiple variables in human immunodeficiency virus (HIV) cohort and electronic health record data: statistical challenges and opportunities.

Authors:  Bryan E Shepherd; Pamela A Shaw
Journal:  Stat Commun Infect Dis       Date:  2020-10-07

2.  Extending Hui-Walter framework to correlated outcomes with application to diagnosis tests of an eye disease among premature infants.

Authors:  Yu-Lun Liu; Gui-Shuang Ying; Graham E Quinn; Xiao-Hua Zhou; Yong Chen
Journal:  Stat Med       Date:  2021-12-03       Impact factor: 2.497

  2 in total

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