Literature DB >> 31444749

NMR Studies of G-Quadruplex Structures and G-Quadruplex-Interactive Compounds.

Clement Lin1, Jonathan Dickerhoff1, Danzhou Yang2,3,4.   

Abstract

G-quadruplexes are noncanonical, four-stranded nucleic acid secondary structures formed in sequences containing consecutive runs of guanines. These G-quadruplex structures have been found to form in nucleic acid regions of biological significance, including human telomeres, gene promoters, and untranslated regions of mRNA. Thus, they are considered attractive therapeutic targets. Nuclear magnetic resonance (NMR) spectroscopy is a powerful method for understanding the structures of G-quadruplexes and their interactions with small molecules under physiologically relevant conditions. Here, we present the NMR methodology used in our research group for the study of DNA G-quadruplex structures in physiologically relevant solution and their ligand interactions.

Entities:  

Keywords:  G-quadruplex structures; G-quadruplex-interactive compounds; NMR spectroscopy

Mesh:

Substances:

Year:  2019        PMID: 31444749      PMCID: PMC7263470          DOI: 10.1007/978-1-4939-9666-7_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  22 in total

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3.  Crystal structure of parallel quadruplexes from human telomeric DNA.

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Journal:  Nature       Date:  2002-05-26       Impact factor: 49.962

4.  Solution structure of the biologically relevant G-quadruplex element in the human c-MYC promoter. Implications for G-quadruplex stabilization.

Authors:  Attila Ambrus; Ding Chen; Jixun Dai; Roger A Jones; Danzhou Yang
Journal:  Biochemistry       Date:  2005-02-15       Impact factor: 3.162

5.  APTO-253 Stabilizes G-quadruplex DNA, Inhibits MYC Expression, and Induces DNA Damage in Acute Myeloid Leukemia Cells.

Authors:  Andrea Local; Hongying Zhang; Khalid D Benbatoul; Peter Folger; Xia Sheng; Cheng-Yu Tsai; Stephen B Howell; William G Rice
Journal:  Mol Cancer Ther       Date:  2018-04-06       Impact factor: 6.261

6.  Inhibition of human telomerase by a G-quadruplex-interactive compound.

Authors:  D Sun; B Thompson; B E Cathers; M Salazar; S M Kerwin; J O Trent; T C Jenkins; S Neidle; L H Hurley
Journal:  J Med Chem       Date:  1997-07-04       Impact factor: 7.446

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8.  DNA G-quadruplex and its potential as anticancer drug target.

Authors:  Onel Buket; Lin Clement; Yang DanZhou
Journal:  Sci China Chem       Date:  2014-11-15       Impact factor: 9.445

9.  Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution.

Authors:  Attila Ambrus; Ding Chen; Jixun Dai; Tiffanie Bialis; Roger A Jones; Danzhou Yang
Journal:  Nucleic Acids Res       Date:  2006-05-19       Impact factor: 16.971

10.  Structure of the intramolecular human telomeric G-quadruplex in potassium solution: a novel adenine triple formation.

Authors:  Jixun Dai; Chandanamali Punchihewa; Attila Ambrus; Ding Chen; Roger A Jones; Danzhou Yang
Journal:  Nucleic Acids Res       Date:  2007-03-29       Impact factor: 16.971

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2.  Properties of Parallel Tetramolecular G-Quadruplex Carrying N-Acetylgalactosamine as Potential Enhancer for Oligonucleotide Delivery to Hepatocytes.

Authors:  Anna Clua; Santiago Grijalvo; Namrata Erande; Swati Gupta; Kristina Yucius; Raimundo Gargallo; Stefania Mazzini; Muthiah Manoharan; Ramon Eritja
Journal:  Molecules       Date:  2022-06-20       Impact factor: 4.927

3.  Long promoter sequences form higher-order G-quadruplexes: an integrative structural biology study of c-Myc, k-Ras and c-Kit promoter sequences.

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4.  Studies on the Interactions of 3,11-Difluoro-6,8,13-trimethyl-8H-quino[4,3,2-kl]acridinium and Insulin with the Quadruplex-Forming Oligonucleotide Sequence a2 from the Insulin-Linked Polymorphic Region.

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5.  Dual targeting of higher-order DNA structures by azacryptands induces DNA junction-mediated DNA damage in cancer cells.

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Journal:  Nucleic Acids Res       Date:  2021-10-11       Impact factor: 16.971

6.  Structural insight into the bulge-containing KRAS oncogene promoter G-quadruplex bound to berberine and coptisine.

Authors:  Kai-Bo Wang; Yushuang Liu; Jinzhu Li; Chengmei Xiao; Yingying Wang; Wei Gu; Yipu Li; Yuan-Zheng Xia; Tingdong Yan; Ming-Hua Yang; Ling-Yi Kong
Journal:  Nat Commun       Date:  2022-10-12       Impact factor: 17.694

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