| Literature DB >> 31435440 |
Małgorzata Urbańczyk1, Michał Jewgiński1, Joanna Krzciuk-Gula1, Jerzy Góra1, Rafał Latajka1, Norbert Sewald2.
Abstract
Antifreeze glycoproteins are a class of biological agents which enable living at temperatures below the freezing point of the body fluids. Antifreeze glycopeptides usually consist of repeating tripeptide unit (-Ala-Ala-Thr*-), glycosylated at the threonine side chain. However, on the microscopic level, the mechanism of action of these compounds remains unclear. As previous research has shown, antifreeze activity of antifreeze glycopeptides strongly relies on the overall conformation of the molecule as well an on the stereochemistry of amino acid residues. The desired monoglycosylated analogues with acetylated amino termini and the carboxy termini in form of N-methylamide have been synthesized. Conformational nuclear magnetic resonance (NMR) studies of the designed analogues have shown a strong influence of the stereochemistry of amino acid residues on the peptide chain stability, which could be connected to the antifreeze activity of these compounds. A better understanding of the mechanism of action of antifreeze glycopeptides would allow applying these materials, e.g., in food industry and biomedicine.Entities:
Keywords: NMR; PP II; antifreeze glycopeptides; conformational preferences; solid phase synthesis
Year: 2019 PMID: 31435440 PMCID: PMC6664394 DOI: 10.3762/bjoc.15.162
Source DB: PubMed Journal: Beilstein J Org Chem ISSN: 1860-5397 Impact factor: 2.883
Figure 1Glycosylated building blocks prepared for solid phase peptide synthesis (SPPS).
Scheme 1A) Modification of Fmoc-Sieber-PS resin: a. piperidine in DMF (20% v/v), rt; 3 × 10 min; b. o-NBS-Cl (4 equiv), collidine (10 equiv) NMP, rt, 2 h, twice; c. triphenylphosphine (PPh3, 5 equiv), methanol (MeOH, 10 equiv), DIAD (5 equiv), THF, rt, 2 h, twice; d. HSCH2CH2OH (10 equiv), DBU (5 equiv), NMP, rt, 2 h, twice; B) SPPS of model AFGP analogues 1 and 2: a. Fmoc-Ala-OH∙H2O (4 equiv), HOAt (4 equiv), HATU (4 equiv), DIEA (8 equiv), NMP, rt, 2 h; b. piperidine 20% v/v in DMF 3 × 10 min; c. Fmoc-L-Thr(α-GalNAc)-OH (1 equiv), HOAt (2.25 equiv), HATU (2.8 equiv), DIEA (2.75 equiv), DMF, rt, 3 h; d. Fmoc-L-Ala-OH∙H2O (4 equiv), TBTU (4 equiv), DIEA (4 equiv), DMF, rt, 2 h; e. Ac2O (50 equiv), DIEA (12.5 equiv), HOBt (1 equiv), DMF, rt, 40 min; f. 1.0 M hydrazine in THF, rt, 2 h; g. 7–10% TFA in DCM, rt, cleavage 10 × 5 min.
Figure 2Model AFGP analogues.
Intramolecular hydrogen bonds – temperature coefficient -dδ/dT [ppb/K] in DMSO.
| Amide proton | Glycopeptide | |
| Ala1 | 5.6 | 5.1 |
| Ala2 | 4.3 | 5.1 |
| Thr3 | 4.8 | 4.8 |
| GalNAc | 5.2 | 5.8 |
| Ala4 | ||
| Ala5 | 7.6 | 8.4 |
| CNMea | 6.4 | 6.3 |
aCNMe–HN of C-terminal group.
Figure 3Conformational preferences of investigated glycopeptides.
Influence of used backbone dihedral onto cluster size of peptide 3.
| Used dihedrals | Size of the biggest cluster [%] |
| Ala1-Ala5 | 1.1 |
| Ala1-Ala4 | 3.7 |
| Ala1-Thr3 | 15.5 |
| Ala2-Ala5 | 1.1 |
| Ala2-Ala4 | 3.7 |
| Thr3-Ala5 | 1.7 |
Characterization of conformational clusters obtained for clustering using backbone dihedrals for Ala1-Thr3 of peptide 3 and 4.
| Cmpd | Size [%] | Ala1 | Ala1 | Thr3 | Ala4 | Ala5 | ||||||
| φ | ψ | φ | ψ | φ | ψ | χ1 | φ | ψ | φ | ψ | ||
| 15.5 | 161.7 | 3.2 | 121.4 | 19.2 | −49.8 | 3.5 | 52.3 | −57.9 | 42.3 | −53.4 | 40.6 | |
| 64.5 | 63.8 | −114.3 | 50.3 | −150.5 | 88.1 | 60.8 | −38.8 | 60.3 | −120.3 | 53.6 | −69.8 | |
Influence of used backbone dihedral onto cluster size of peptide 4.
| Used dihedrals | Size of the biggest cluster [%] |
| Ala1-Ala5 | 1.1 |
| Ala1-Ala4 | 5.7 |
| Ala1-Thr3 | 11.1 |
| Ala2-Ala5 | 3.9 |
| Ala2-Ala4 | 64.5 |
| Thr3-Ala5 | 7.8 |
Figure 4Conformational preferences of monosaccharide moiety. A) cluster 1 for glycopeptide 3, B) cluster 1 for glycopeptide 4.