Literature DB >> 29392937

Antifreeze Glycoproteins Bind Reversibly to Ice via Hydrophobic Groups.

Kenji Mochizuki1,2, Valeria Molinero1.   

Abstract

Antifreeze molecules allow organisms to survive in subzero environments. Antifreeze glycoproteins (AFGPs), produced by polar fish, are the most potent inhibitors of ice recrystallization. To date, the molecular mechanism by which AFGPs bind to ice has not yet been elucidated. Mutation experiments cannot resolve whether the binding occurs through the peptide, the saccharides, or both. Here, we use molecular simulations to determine the mechanism and driving forces for binding of AFGP8 to ice, its selectivity for the primary prismatic plane, and the molecular origin of its exceptional ice recrystallization activity. Consistent with experiments, AFGP8 in simulations preferentially adopts the PPII helix secondary structure in solution. We show that the segregation of hydrophilic and hydrophobic groups in the PPII helix is vital for ice binding. Binding occurs through adsorption of methyl groups of the peptide and disaccharides to ice, driven by the entropy of dehydration of the hydrophobic groups as they nest in the cavities at the ice surface. The selectivity to the primary prismatic plane originates in the deeper cavities it has compared to the basal plane. We estimate the free energy of binding of AFGP8 and the longer AFGPs4-6, and find them to be consistent with the reversible binding demonstrated in experiments. The simulations reveal that AFGP8 binds to ice through a myriad of conformations that it uses to diffuse through the ice surface and find ice steps, to which it strongly adsorbs. We interpret that the existence of multiple, weak binding sites is the key for the exceptional ice recrystallization inhibition activity of AFGPs.

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Year:  2018        PMID: 29392937     DOI: 10.1021/jacs.7b13630

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  16 in total

1.  Crystal-plane-dependent effects of antifreeze glycoprotein impurity for ice growth dynamics.

Authors:  Yoshinori Furukawa; Ken Nagashima; Shunichi Nakatsubo; Salvador Zepeda; Ken-Ichiro Murata; Gen Sazaki
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2019-06-03       Impact factor: 4.226

2.  Growth suppression of ice crystal basal face in the presence of a moderate ice-binding protein does not confer hyperactivity.

Authors:  Maddalena Bayer-Giraldi; Gen Sazaki; Ken Nagashima; Sepp Kipfstuhl; Dmitry A Vorontsov; Yoshinori Furukawa
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-02       Impact factor: 11.205

3.  Drude Polarizable Force Field Parametrization of Carboxylate and N-Acetyl Amine Carbohydrate Derivatives.

Authors:  Poonam Pandey; Asaminew H Aytenfisu; Alexander D MacKerell; Sairam S Mallajosyula
Journal:  J Chem Theory Comput       Date:  2019-08-29       Impact factor: 6.006

Review 4.  Chemical approaches to cryopreservation.

Authors:  Kathryn A Murray; Matthew I Gibson
Journal:  Nat Rev Chem       Date:  2022-07-18       Impact factor: 34.571

Review 5.  Effect of antifreeze proteins on the freeze-thaw cycle of foods: fundamentals, mechanisms of action, current challenges and recommendations for future work.

Authors:  Vicente Amirpasha Tirado-Kulieva; William Rolando Miranda-Zamora; Ernesto Hernández-Martínez; Lucia Ruth Pantoja-Tirado; Delicia Liliana Bazán-Tantaleán; Ever William Camacho-Orbegoso
Journal:  Heliyon       Date:  2022-10-07

6.  Disaccharide Residues are Required for Native Antifreeze Glycoprotein Activity.

Authors:  Yuling Sun; Giulia Giubertoni; Huib J Bakker; Jie Liu; Manfred Wagner; David Y W Ng; Arthur L Devries; Konrad Meister
Journal:  Biomacromolecules       Date:  2021-05-06       Impact factor: 6.988

7.  Facially Amphipathic Glycopolymers Inhibit Ice Recrystallization.

Authors:  Ben Graham; Alice E R Fayter; Judith E Houston; Rachel C Evans; Matthew I Gibson
Journal:  J Am Chem Soc       Date:  2018-04-19       Impact factor: 15.419

8.  Multivalent Presentation of Ice Recrystallization Inhibiting Polymers on Nanoparticles Retains Activity.

Authors:  Christopher Stubbs; Laura E Wilkins; Alice E R Fayter; Marc Walker; Matthew I Gibson
Journal:  Langmuir       Date:  2018-08-22       Impact factor: 3.882

9.  The Ensemble of Conformations of Antifreeze Glycoproteins (AFGP8): A Study Using Nuclear Magnetic Resonance Spectroscopy.

Authors:  Cheenou Her; Yin Yeh; Viswanathan V Krishnan
Journal:  Biomolecules       Date:  2019-06-17

10.  Synthesis and conformational preferences of short analogues of antifreeze glycopeptides (AFGP).

Authors:  Małgorzata Urbańczyk; Michał Jewgiński; Joanna Krzciuk-Gula; Jerzy Góra; Rafał Latajka; Norbert Sewald
Journal:  Beilstein J Org Chem       Date:  2019-07-16       Impact factor: 2.883

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