Literature DB >> 31427527

Repurposing off-the-shelf antihelix antibodies for enabling structural biology.

Shohei Koide1,2.   

Abstract

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Year:  2019        PMID： 31427527      PMCID： PMC6731675          DOI： 10.1073/pnas.1912643116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  13 in total

Review 1.  Epitope tagging: general method for tracking recombinant proteins.

Authors:  C E Fritze; T R Anderson
Journal:  Methods Enzymol       Date:  2000       Impact factor: 1.600

2.  Revisiting the Ramachandran plot: hard-sphere repulsion, electrostatics, and H-bonding in the alpha-helix.

Authors:  Bosco K Ho; Annick Thomas; Robert Brasseur
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

Review 3.  Crystallisation of membrane proteins mediated by antibody fragments.

Authors:  Carola Hunte; Hartmut Michel
Journal:  Curr Opin Struct Biol       Date:  2002-08       Impact factor: 6.809

4.  Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library.

Authors:  Abhishek K Jha; Andres Colubri; Muhammad H Zaman; Shohei Koide; Tobin R Sosnick; Karl F Freed
Journal:  Biochemistry       Date:  2005-07-19       Impact factor: 3.162

5.  Locking the Elbow: Improved Antibody Fab Fragments as Chaperones for Structure Determination.

Authors:  Lucas J Bailey; Kimberly M Sheehy; Pawel K Dominik; Wenguang G Liang; Huan Rui; Michael Clark; Mateusz Jaskolowski; Yejoon Kim; Dawid Deneka; Wei-Jen Tang; Anthony A Kossiakoff
Journal:  J Mol Biol       Date:  2017-12-19       Impact factor: 5.469

6.  Fabs enable single particle cryoEM studies of small proteins.

Authors:  Shenping Wu; Agustin Avila-Sakar; JungMin Kim; David S Booth; Charles H Greenberg; Andrea Rossi; Maofu Liao; Xueming Li; Akram Alian; Sarah L Griner; Narinobu Juge; Yadong Yu; Claudia M Mergel; Javier Chaparro-Riggers; Pavel Strop; Robert Tampé; Robert H Edwards; Robert M Stroud; Charles S Craik; Yifan Cheng
Journal:  Structure       Date:  2012-04-03       Impact factor: 5.006

7.  Protein crystallization by surface entropy reduction: optimization of the SER strategy.

Authors:  David R Cooper; Tomasz Boczek; Katarzyna Grelewska; Malgorzata Pinkowska; Malgorzata Sikorska; Michal Zawadzki; Zygmunt Derewenda
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-04-21

Review 8.  Engineering of recombinant crystallization chaperones.

Authors:  Shohei Koide
Journal:  Curr Opin Struct Biol       Date:  2009-05-26       Impact factor: 6.809

9.  A portable RNA sequence whose recognition by a synthetic antibody facilitates structural determination.

Authors:  Yelena Koldobskaya; Erica M Duguid; David M Shechner; Nikolai B Suslov; Jingdong Ye; Sachdev S Sidhu; David P Bartel; Shohei Koide; Anthony A Kossiakoff; Joseph A Piccirilli
Journal:  Nat Struct Mol Biol       Date:  2010-12-12       Impact factor: 15.369

Review 10.  Monobodies and other synthetic binding proteins for expanding protein science.

Authors:  Fern Sha; Gabriel Salzman; Ankit Gupta; Shohei Koide
Journal:  Protein Sci       Date:  2017-03-24       Impact factor: 6.725
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  2 in total

1.  N-terminal Transmembrane-Helix Epitope Tag for X-ray Crystallography and Electron Microscopy of Small Membrane Proteins.

Authors:  Benjamin C McIlwain; Amanda L Erwin; Alexander R Davis; B Ben Koff; Louise Chang; Tatsiana Bylund; Gwo-Yu Chuang; Peter D Kwong; Melanie D Ohi; Yen-Ting Lai; Randy B Stockbridge
Journal:  J Mol Biol       Date:  2021-03-05       Impact factor: 6.151

2.  Synthetic antibodies against BRIL as universal fiducial marks for single-particle cryoEM structure determination of membrane proteins.

Authors:  Somnath Mukherjee; Satchal K Erramilli; Mark Ammirati; Frances J D Alvarez; Kimberly F Fennell; Michael D Purdy; Blazej M Skrobek; Katarzyna Radziwon; John Coukos; Yanyong Kang; Przemysław Dutka; Xiang Gao; Xiayang Qiu; Mark Yeager; H Eric Xu; Seungil Han; Anthony A Kossiakoff
Journal:  Nat Commun       Date:  2020-03-27       Impact factor: 14.919
  2 in total

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