Literature DB >> 19477632

Engineering of recombinant crystallization chaperones.

Shohei Koide1.   

Abstract

The preparation of diffraction quality crystals remains the major bottleneck in macromolecular X-ray crystallography. A crystallization chaperone is an auxiliary protein, such as fragments of monoclonal antibodies, that binds to and increases the crystallization probability of a target molecule of interest. Such chaperones reduce conformational heterogeneity, mask counterproductive surfaces while extending surfaces predisposed to forming crystal contacts, and provide phasing information. Crystallization chaperones generated using recombinant technologies have emerged as superior alternatives that increase the throughput and eliminate inherent limitations associated with antibody production by animal immunization and the hybridoma technology.

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Year:  2009        PMID: 19477632      PMCID: PMC2736338          DOI: 10.1016/j.sbi.2009.04.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  53 in total

Review 1.  Recognition of antigens by single-domain antibody fragments: the superfluous luxury of paired domains.

Authors:  S Muyldermans; C Cambillau; L Wyns
Journal:  Trends Biochem Sci       Date:  2001-04       Impact factor: 13.807

2.  Natural beta-sheet proteins use negative design to avoid edge-to-edge aggregation.

Authors:  Jane S Richardson; David C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-05       Impact factor: 11.205

Review 3.  Crystallisation of membrane proteins mediated by antibody fragments.

Authors:  Carola Hunte; Hartmut Michel
Journal:  Curr Opin Struct Biol       Date:  2002-08       Impact factor: 6.809

4.  Directed evolution of high-affinity antibody mimics using mRNA display.

Authors:  Lihui Xu; Patti Aha; Ke Gu; Robert G Kuimelis; Markus Kurz; Terence Lam; Ai Ching Lim; Hongxiang Liu; Peter A Lohse; Lin Sun; Shawn Weng; Richard W Wagner; Dasa Lipovsek
Journal:  Chem Biol       Date:  2002-08

5.  Rational protein crystallization by mutational surface engineering.

Authors:  Zygmunt S Derewenda
Journal:  Structure       Date:  2004-04       Impact factor: 5.006

6.  Phage-displayed antibody libraries of synthetic heavy chain complementarity determining regions.

Authors:  Sachdev S Sidhu; Bing Li; Yvonne Chen; Frederic A Fellouse; Charles Eigenbrot; Germaine Fuh
Journal:  J Mol Biol       Date:  2004-04-23       Impact factor: 5.469

Review 7.  Selecting and screening recombinant antibody libraries.

Authors:  Hennie R Hoogenboom
Journal:  Nat Biotechnol       Date:  2005-09       Impact factor: 54.908

8.  Expressed murine and human CDR-H3 intervals of equal length exhibit distinct repertoires that differ in their amino acid composition and predicted range of structures.

Authors:  Michael Zemlin; Martin Klinger; Jason Link; Cosima Zemlin; Karl Bauer; Jeffrey A Engler; Harry W Schroeder; Perry M Kirkham
Journal:  J Mol Biol       Date:  2003-12-05       Impact factor: 5.469

9.  Crystal structure of the intrinsically flexible addiction antidote MazE.

Authors:  Remy Loris; Irina Marianovsky; Jurij Lah; Toon Laeremans; Hanna Engelberg-Kulka; Gad Glaser; Serge Muyldermans; Lode Wyns
Journal:  J Biol Chem       Date:  2003-05-12       Impact factor: 5.157

10.  High-affinity binders selected from designed ankyrin repeat protein libraries.

Authors:  H Kaspar Binz; Patrick Amstutz; Andreas Kohl; Michael T Stumpp; Christophe Briand; Patrik Forrer; Markus G Grütter; Andreas Plückthun
Journal:  Nat Biotechnol       Date:  2004-04-18       Impact factor: 54.908

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  76 in total

1.  Isoform-specific monobody inhibitors of small ubiquitin-related modifiers engineered using structure-guided library design.

Authors:  Ryan N Gilbreth; Khue Truong; Ikenna Madu; Akiko Koide; John B Wojcik; Nan-Sheng Li; Joseph A Piccirilli; Yuan Chen; Shohei Koide
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-25       Impact factor: 11.205

2.  Crystallization of a challenging antigen-antibody complex: TLR3 ECD with three noncompeting Fabs.

Authors:  Thomas J Malia; Galina Obmolova; Jinquan Luo; Alexey Teplyakov; Raymond Sweet; Gary L Gilliland
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-09-30

3.  Computational design of a symmetric homodimer using β-strand assembly.

Authors:  P Benjamin Stranges; Mischa Machius; Michael J Miley; Ashutosh Tripathy; Brian Kuhlman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-05       Impact factor: 11.205

4.  Asymmetry in the homodimeric ABC transporter MsbA recognized by a DARPin.

Authors:  Anshumali Mittal; Simon Böhm; Markus G Grütter; Enrica Bordignon; Markus A Seeger
Journal:  J Biol Chem       Date:  2012-04-20       Impact factor: 5.157

5.  Crystal structure of an RNA polymerase ribozyme in complex with an antibody fragment.

Authors:  Joseph A Piccirilli; Yelena Koldobskaya
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

6.  Application of protein engineering to enhance crystallizability and improve crystal properties.

Authors:  Zygmunt S Derewenda
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-04-21

7.  Biocrystallography: past, present, future.

Authors:  Richard Giegé; Claude Sauter
Journal:  HFSP J       Date:  2010-04-22

8.  Rapid identification of recombinant Fabs that bind to membrane proteins.

Authors:  Jungmin Kim; Robert M Stroud; Charles S Craik
Journal:  Methods       Date:  2011-09-20       Impact factor: 3.608

9.  Identification of a tetratricopeptide repeat-like domain in the nicastrin subunit of γ-secretase using synthetic antibodies.

Authors:  Xulun Zhang; Robert J Hoey; Guoqing Lin; Akiko Koide; Brenda Leung; Kwangwook Ahn; Georgia Dolios; Marcin Paduch; Takeshi Ikeuchi; Rong Wang; Yue-Ming Li; Shohei Koide; Sangram S Sisodia
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-14       Impact factor: 11.205

10.  Structure of the caspase-recruitment domain from a zebrafish guanylate-binding protein.

Authors:  Tengchuan Jin; Mo Huang; Patrick Smith; Jiansheng Jiang; T Sam Xiao
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-07-27
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