Literature DB >> 29273204

Locking the Elbow: Improved Antibody Fab Fragments as Chaperones for Structure Determination.

Lucas J Bailey1, Kimberly M Sheehy1, Pawel K Dominik1, Wenguang G Liang2, Huan Rui1, Michael Clark1, Mateusz Jaskolowski3, Yejoon Kim1, Dawid Deneka4, Wei-Jen Tang2, Anthony A Kossiakoff5.   

Abstract

Antibody Fab fragments have been exploited with significant success to facilitate the structure determination of challenging macromolecules as crystallization chaperones and as molecular fiducial marks for single particle cryo-electron microscopy approaches. However, the inherent flexibility of the "elbow" regions, which link the constant and variable domains of the Fab, can introduce disorder and thus diminish their effectiveness. We have developed a phage display engineering strategy to generate synthetic Fab variants that significantly reduces elbow flexibility, while maintaining their high affinity and stability. This strategy was validated using previously recalcitrant Fab-antigen complexes where introduction of an engineered elbow region enhanced crystallization and diffraction resolution. Furthermore, incorporation of the mutations appears to be generally portable to other synthetic antibodies and may serve as a universal strategy to enhance the success rates of Fabs as structure determination chaperones.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Fab elbow angle; Fab–protein complex; antibody engineering; cryo-EM fiducial mark; crystallization chaperone

Mesh:

Substances:

Year:  2017        PMID: 29273204      PMCID: PMC5800945          DOI: 10.1016/j.jmb.2017.12.012

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  23 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-19       Impact factor: 11.205

2.  Structural basis for activation of voltage sensor domains in an ion channel TPC1.

Authors:  Alexander F Kintzer; Evan M Green; Pawel K Dominik; Michael Bridges; Jean-Paul Armache; Dawid Deneka; Sangwoo S Kim; Wayne Hubbell; Anthony A Kossiakoff; Yifan Cheng; Robert M Stroud
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Review 3.  Why recombinant antibodies - benefits and applications.

Authors:  Koli Basu; Evan M Green; Yifan Cheng; Charles S Craik
Journal:  Curr Opin Biotechnol       Date:  2019-03-05       Impact factor: 9.740

4.  An engineered ultra-high affinity Fab-Protein G pair enables a modular antibody platform with multifunctional capability.

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5.  Rapid Discovery and Characterization of Synthetic Neutralizing Antibodies against Anthrax Edema Toxin.

Authors:  Mara Farcasanu; Andrew G Wang; Tomasz Uchański; Lucas J Bailey; Jiping Yue; Zhaochun Chen; Xiaoyang Wu; Anthony Kossiakoff; Wei-Jen Tang
Journal:  Biochemistry       Date:  2019-06-19       Impact factor: 3.162

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Authors:  Joël S Bloch; Somnath Mukherjee; Julia Kowal; Ekaterina V Filippova; Martina Niederer; Els Pardon; Jan Steyaert; Anthony A Kossiakoff; Kaspar P Locher
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-23       Impact factor: 11.205

7.  Quaternary structure independent folding of voltage-gated ion channel pore domain subunits.

Authors:  Cristina Arrigoni; Marco Lolicato; David Shaya; Ahmed Rohaim; Felix Findeisen; Lam-Kiu Fong; Claire M Colleran; Pawel Dominik; Sangwoo S Kim; Jonathan P Schuermann; William F DeGrado; Michael Grabe; Anthony A Kossiakoff; Daniel L Minor
Journal:  Nat Struct Mol Biol       Date:  2022-06-02       Impact factor: 18.361

8.  Development of a VRC01-class germline targeting immunogen derived from anti-idiotypic antibodies.

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Journal:  Cell Rep       Date:  2021-05-04       Impact factor: 9.423

9.  Megabodies expand the nanobody toolkit for protein structure determination by single-particle cryo-EM.

Authors:  Tomasz Uchański; Simonas Masiulis; Baptiste Fischer; Valentina Kalichuk; Uriel López-Sánchez; Eleftherios Zarkadas; Miriam Weckener; Andrija Sente; Philip Ward; Alexandre Wohlkönig; Thomas Zögg; Han Remaut; James H Naismith; Hugues Nury; Wim Vranken; A Radu Aricescu; Els Pardon; Jan Steyaert
Journal:  Nat Methods       Date:  2021-01-06       Impact factor: 47.990

10.  Zinc binding alters the conformational dynamics and drives the transport cycle of the cation diffusion facilitator YiiP.

Authors:  Maria Lopez-Redondo; Shujie Fan; Akiko Koide; Shohei Koide; Oliver Beckstein; David L Stokes
Journal:  J Gen Physiol       Date:  2021-07-13       Impact factor: 4.086

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