Literature DB >> 31407274

Imaging Single mRNA Molecules in Mammalian Cells Using an Optimized MS2-MCP System.

Maria Vera1, Evelina Tutucci2, Robert H Singer3,4.   

Abstract

Visualization of single mRNAs in their native cellular environment provides key information to study gene expression regulation. This fundamental biological question triggered the development of the MS2-MCP (MS2-Capsid Protein) system to tag mRNAs and image their life cycle using widefield fluorescence microscopy. The last two decades have evolved toward improving the qualitative and quantitative characteristics of the MS2-MCP system. Here, we provide a protocol to use the latest versions, MS2V6 and MS2V7, to tag and visualize mRNAs in mammalian cells in culture. The motivation behind engineering MS2V6 and MS2V7 was to overcome a degradation caveat observed in S. cerevisiae with the previous MS2-MCP systems. While for yeast we recommend the use of MS2V6, we found that for live-cell imaging experiments in mammalian cells, the MS2V7 has improved reporter properties.

Entities:  

Keywords:  MS2 system; MS2V6; MS2V7; Quantitative fluorescence microscopy; Short-lived mRNAs; Single cell; Single-molecule imaging; smFISH

Mesh:

Substances:

Year:  2019        PMID: 31407274      PMCID: PMC8950109          DOI: 10.1007/978-1-4939-9674-2_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  23 in total

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Authors:  Carolina Eliscovich; Shailesh M Shenoy; Robert H Singer
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Review 2.  A Growing Toolbox to Image Gene Expression in Single Cells: Sensitive Approaches for Demanding Challenges.

Authors:  Xavier Pichon; Mounia Lagha; Florian Mueller; Edouard Bertrand
Journal:  Mol Cell       Date:  2018-08-02       Impact factor: 17.970

Review 3.  Single-Cell and Single-Molecule Analysis of Gene Expression Regulation.

Authors:  Maria Vera; Jeetayu Biswas; Adrien Senecal; Robert H Singer; Hye Yoon Park
Journal:  Annu Rev Genet       Date:  2016-11-23       Impact factor: 16.830

4.  Heat shock protein 70 binds its own messenger ribonucleic acid as part of a gene expression self-limiting mechanism.

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5.  Translation. An RNA biosensor for imaging the first round of translation from single cells to living animals.

Authors:  James M Halstead; Timothée Lionnet; Johannes H Wilbertz; Frank Wippich; Anne Ephrussi; Robert H Singer; Jeffrey A Chao
Journal:  Science       Date:  2015-03-20       Impact factor: 47.728

6.  β-Actin mRNA compartmentalization enhances focal adhesion stability and directs cell migration.

Authors:  Zachary B Katz; Amber L Wells; Hye Yoon Park; Bin Wu; Shailesh M Shenoy; Robert H Singer
Journal:  Genes Dev       Date:  2012-09-01       Impact factor: 11.361

7.  Translation dynamics of single mRNAs in live cells and neurons.

Authors:  Bin Wu; Carolina Eliscovich; Young J Yoon; Robert H Singer
Journal:  Science       Date:  2016-05-05       Impact factor: 47.728

8.  A transgenic mouse for in vivo detection of endogenous labeled mRNA.

Authors:  Timothée Lionnet; Kevin Czaplinski; Xavier Darzacq; Yaron Shav-Tal; Amber L Wells; Jeffrey A Chao; Hye Yoon Park; Valeria de Turris; Melissa Lopez-Jones; Robert H Singer
Journal:  Nat Methods       Date:  2011-01-16       Impact factor: 28.547

9.  A general method to improve fluorophores for live-cell and single-molecule microscopy.

Authors:  Jonathan B Grimm; Brian P English; Jiji Chen; Joel P Slaughter; Zhengjian Zhang; Andrey Revyakin; Ronak Patel; John J Macklin; Davide Normanno; Robert H Singer; Timothée Lionnet; Luke D Lavis
Journal:  Nat Methods       Date:  2015-01-19       Impact factor: 28.547

10.  An improved MS2 system for accurate reporting of the mRNA life cycle.

Authors:  Evelina Tutucci; Maria Vera; Jeetayu Biswas; Jennifer Garcia; Roy Parker; Robert H Singer
Journal:  Nat Methods       Date:  2017-11-13       Impact factor: 28.547

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Review 5.  Technologies Enabling Single-Molecule Super-Resolution Imaging of mRNA.

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Review 6.  Interrogating lncRNA functions via CRISPR/Cas systems.

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  6 in total

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