Literature DB >> 25792328

Translation. An RNA biosensor for imaging the first round of translation from single cells to living animals.

James M Halstead1, Timothée Lionnet2, Johannes H Wilbertz3, Frank Wippich4, Anne Ephrussi5, Robert H Singer6, Jeffrey A Chao7.   

Abstract

Analysis of single molecules in living cells has provided quantitative insights into the kinetics of fundamental biological processes; however, the dynamics of messenger RNA (mRNA) translation have yet to be addressed. We have developed a fluorescence microscopy technique that reports on the first translation events of individual mRNA molecules. This allowed us to examine the spatiotemporal regulation of translation during normal growth and stress and during Drosophila oocyte development. We have shown that mRNAs are not translated in the nucleus but translate within minutes after export, that sequestration within P-bodies regulates translation, and that oskar mRNA is not translated until it reaches the posterior pole of the oocyte. This methodology provides a framework for studying initiation of protein synthesis on single mRNAs in living cells.
Copyright © 2015, American Association for the Advancement of Science.

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Year:  2015        PMID: 25792328      PMCID: PMC4451088          DOI: 10.1126/science.aaa3380

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  37 in total

1.  Real-time observation of transcription initiation and elongation on an endogenous yeast gene.

Authors:  Daniel R Larson; Daniel Zenklusen; Bin Wu; Jeffrey A Chao; Robert H Singer
Journal:  Science       Date:  2011-04-22       Impact factor: 47.728

2.  Induction of germ cell formation by oskar.

Authors:  A Ephrussi; R Lehmann
Journal:  Nature       Date:  1992-07-30       Impact factor: 49.962

3.  The EJC factor eIF4AIII modulates synaptic strength and neuronal protein expression.

Authors:  Corinna Giorgi; Gene W Yeo; Martha E Stone; Donald B Katz; Christopher Burge; Gina Turrigiano; Melissa J Moore
Journal:  Cell       Date:  2007-07-13       Impact factor: 41.582

4.  Ecdysone-inducible gene expression in mammalian cells and transgenic mice.

Authors:  D No; T P Yao; R M Evans
Journal:  Proc Natl Acad Sci U S A       Date:  1996-04-16       Impact factor: 11.205

5.  Regulation of axon guidance by compartmentalized nonsense-mediated mRNA decay.

Authors:  Dilek Colak; Sheng-Jian Ji; Bo T Porse; Samie R Jaffrey
Journal:  Cell       Date:  2013-06-06       Impact factor: 41.582

6.  Translational coregulation of 5'TOP mRNAs by TIA-1 and TIAR.

Authors:  Christian Kroun Damgaard; Jens Lykke-Andersen
Journal:  Genes Dev       Date:  2011-10-01       Impact factor: 11.361

Review 7.  Single-molecule approaches to stochastic gene expression.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Annu Rev Biophys       Date:  2009       Impact factor: 12.981

Review 8.  Eukaryotic stress granules: the ins and outs of translation.

Authors:  J Ross Buchan; Roy Parker
Journal:  Mol Cell       Date:  2009-12-25       Impact factor: 17.970

9.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

10.  Nuclear translation visualized by ribosome-bound nascent chain puromycylation.

Authors:  Alexandre David; Brian P Dolan; Heather D Hickman; Jonathan J Knowlton; Giovanna Clavarino; Philippe Pierre; Jack R Bennink; Jonathan W Yewdell
Journal:  J Cell Biol       Date:  2012-04-02       Impact factor: 10.539

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  94 in total

1.  Advancing multiscale structural mapping of the brain through fluorescence imaging and analysis across length scales.

Authors:  L J Hogstrom; S M Guo; K Murugadoss; M Bathe
Journal:  Interface Focus       Date:  2016-02-06       Impact factor: 3.906

2.  A Quantitative and Predictive Model for RNA Binding by Human Pumilio Proteins.

Authors:  Inga Jarmoskaite; Sarah K Denny; Pavanapuresan P Vaidyanathan; Winston R Becker; Johan O L Andreasson; Curtis J Layton; Kalli Kappel; Varun Shivashankar; Raashi Sreenivasan; Rhiju Das; William J Greenleaf; Daniel Herschlag
Journal:  Mol Cell       Date:  2019-05-08       Impact factor: 17.970

Review 3.  Imaging the Life and Death of mRNAs in Single Cells.

Authors:  Jeffrey A Chao; Timothée Lionnet
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-12-03       Impact factor: 10.005

4.  The key protein of endosomal mRNP transport Rrm4 binds translational landmark sites of cargo mRNAs.

Authors:  Lilli Olgeiser; Carl Haag; Susan Boerner; Jernej Ule; Anke Busch; Janine Koepke; Julian König; Michael Feldbrügge; Kathi Zarnack
Journal:  EMBO Rep       Date:  2018-12-14       Impact factor: 8.807

5.  mRNA quantification using single-molecule FISH in Drosophila embryos.

Authors:  Tatjana Trcek; Timothée Lionnet; Hari Shroff; Ruth Lehmann
Journal:  Nat Protoc       Date:  2016-06-08       Impact factor: 13.491

6.  Bright photoactivatable fluorophores for single-molecule imaging.

Authors:  Jonathan B Grimm; Brian P English; Heejun Choi; Anand K Muthusamy; Brian P Mehl; Peng Dong; Timothy A Brown; Jennifer Lippincott-Schwartz; Zhe Liu; Timothée Lionnet; Luke D Lavis
Journal:  Nat Methods       Date:  2016-10-24       Impact factor: 28.547

7.  Single-Molecule Tracking and Its Application in Biomolecular Binding Detection.

Authors:  Cong Liu; Yen-Liang Liu; Evan P Perillo; Andrew K Dunn; Hsin-Chih Yeh
Journal:  IEEE J Sel Top Quantum Electron       Date:  2016-05-17       Impact factor: 4.544

8.  Single-cell systems biology: probing the basic unit of information flow.

Authors:  Simona Patange; Michelle Girvan; Daniel R Larson
Journal:  Curr Opin Syst Biol       Date:  2017-12-06

Review 9.  The Growing Toolbox for Protein Synthesis Studies.

Authors:  Shintaro Iwasaki; Nicholas T Ingolia
Journal:  Trends Biochem Sci       Date:  2017-05-28       Impact factor: 13.807

10.  Dmpk gene deletion or antisense knockdown does not compromise cardiac or skeletal muscle function in mice.

Authors:  Samuel T Carrell; Ellie M Carrell; David Auerbach; Sanjay K Pandey; C Frank Bennett; Robert T Dirksen; Charles A Thornton
Journal:  Hum Mol Genet       Date:  2016-08-13       Impact factor: 6.150

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