| Literature DB >> 31404371 |
Hong Zhang1, Yalin Zhang2, Yani Duan1.
Abstract
We investigated the feasibility of using the DNA barcode region in identifying Deltocephalus from China. Sequences of the barcode region of the mitochondrial COI gene were obtained for 98 specimens (Deltocephalus vulgaris - 88, Deltocephalus pulicaris - 5, Deltocephalus uncinatus - 5). The average genetic distances among morphological and geographical groups of D. vulgaris ranged from 0.9% to 6.3% and among the three species of Deltocephalus ranged from 16.4% to 21.9% without overlap, which effectively reveals the existence of a "DNA barcoding gap". It is important to assess the status of these morphological variants and explore the genetic variation among Chinese populations of D. vulgaris because the status of this species has led to taxonomic confusion because specimens representing two distinct morphological variants based on the form of the aedeagus are often encountered at a single locality. Forty-five haplotypes (D. vulgaris - 36, D. pulicaris - 5, D. uncinatus - 4) were defined to perform the phylogenetic analyses; they revealed no distinct lineages corresponding either to the two morphotypes of D. vulgaris or to geographical populations. Thus, there is no evidence that these variants represent genetically distinct species.Entities:
Keywords: COI; genetic distance; morphological variant
Year: 2019 PMID: 31404371 PMCID: PMC6684520 DOI: 10.3897/zookeys.867.35058
Source DB: PubMed Journal: Zookeys ISSN: 1313-2970 Impact factor: 1.546
Figure 2.Morphological variant marked with A for A habitus in dorsal view B subgenital plate C subgenital plate D style E aedeagus and connective, dorsal view F aedeagus and connective, lateral view (after Zhang and Duan 2011).
Figure 3.Morphological variant marked with B for A habitus in dorsal view B subgenital plate C subgenital plate D style E aedeagus and connective, dorsal view F aedeagus and connective, lateral view (after Zhang and Duan 2011).
List of samples studied and their relevant information.
| Species | Group code | Sample size | Individual code | Haplotype | Locality | GenBank accession |
|---|---|---|---|---|---|---|
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| YNA | 8 | YNA1 | Hap1 | Banhong Town, Yunnan Province |
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| YNA2 | Hap2 | Banhong Town, Yunnan Province |
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| YNA3 | Hap3 | Banhong Town, Yunnan Province |
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| YNA4 | Hap2 | Banhong Town, Yunnan Province |
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| YNA5 | Hap4 | Banhong Town, Yunnan Province |
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| YNA6 | Hap2 | Banhong Town, Yunnan Province |
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| YNA7 | Hap1 | Banhong Town, Yunnan Province |
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| YNA8 | Hap2 | Banhong Town, Yunnan Province |
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| YNB | 13 | YNB1 | Hap5 | Banhong Town, Yunnan Province |
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| YNB2 | Hap1 | Banhong Town, Yunnan Province |
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| YNB3 | Hap5 | Banhong Town, Yunnan Province |
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| YNB4 | Hap5 | Banhong Town, Yunnan Province |
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| YNB5 | Hap5 | Banhong Town, Yunnan Province |
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| YNB6 | Hap5 | Banhong Town, Yunnan Province |
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| YNB7 | Hap5 | Banhong Town, Yunnan Province |
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| YNB8 | Hap6 | Banhong Town, Yunnan Province |
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| YNB9 | Hap7 | Banhong Town, Yunnan Province |
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| YNB10 | Hap8 | Banhong Town, Yunnan Province |
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| YNB11 | Hap5 | Banhong Town, Yunnan Province |
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| YNB12 | Hap5 | Banhong Town, Yunnan Province |
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| YNB13 | Hap5 | Banhong Town, Yunnan Province |
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| ZJA | 7 | ZJA1 | Hap9 | Lin’an County, Zhejiang Province |
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| ZJA2 | Hap10 | Lin’an County, Zhejiang Province |
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| ZJA3 | Hap11 | Lin’an County, Zhejiang Province |
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| ZJA4 | Hap12 | Lin’an County, Zhejiang Province |
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| ZJA5 | Hap13 | Lin’an County, Zhejiang Province |
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| ZJA6 | Hap12 | Lin’an County, Zhejiang Province |
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| ZJA7 | Hap12 | Lin’an County, Zhejiang Province |
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| ZJB | 8 | ZJB1 | Hap14 | Kowloon Mountain, Zhejiang Province |
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| ZJB2 | Hap10 | Kowloon Mountain, Zhejiang Province |
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| ZJB3 | Hap15 | Kowloon Mountain, Zhejiang Province |
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| ZJB4 | Hap12 | Kowloon Mountain, Zhejiang Province |
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| ZJB5 | Hap16 | Kowloon Mountain, Zhejiang Province |
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| ZJB6 | Hap17 | Kowloon Mountain, Zhejiang Province |
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| ZJB7 | Hap18 | Kowloon Mountain, Zhejiang Province |
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| ZJB8 | Hap19 | Kowloon Mountain, Zhejiang Province |
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| FJA | 7 | FJA1 | Hap20 | Shajian Town, Fujian Province |
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| FJA2 | Hap20 | Shajian Town, Fujian Province |
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| FJA3 | Hap5 | Shajian Town, Fujian Province |
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| FJA4 | Hap21 | Shajian Town, Fujian Province |
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| FJA5 | Hap5 | Shajian Town, Fujian Province |
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| FJA6 | Hap20 | Shajian Town, Fujian Province |
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| FJA7 | Hap5 | Shajian Town, Fujian Province |
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| FJB | 7 | FJB1 | Hap22 | Shajian Town, Fujian Province |
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| FJB2 | Hap20 | Shajian Town, Fujian Province |
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| FJB3 | Hap20 | Shajian Town, Fujian Province |
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| FJB4 | Hap20 | Shajian Town, Fujian Province |
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| FJB5 | Hap20 | Shajian Town, Fujian Province |
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| FJB6 | Hap8 | Shajian Town, Fujian Province |
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| FJB7 | Hap23 | Shajian Town, Fujian Province |
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| HNA | 9 | HNA1 | Hap24 | Jianfeng Mountain, Hainan Province |
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| HNA2 | Hap8 | Jianfeng Mountain, Hainan Province |
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| HNA3 | Hap8 | Jianfeng Mountain, Hainan Province |
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| HNA4 | Hap8 | Jianfeng Mountain, Hainan Province |
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| HNA5 | Hap8 | Jianfeng Mountain, Hainan Province |
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| HNA6 | Hap25 | Jianfeng Mountain, Hainan Province |
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| HNA7 | Hap8 | Jianfeng Mountain, Hainan Province |
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| HNA8 | Hap26 | Jianfeng Mountain, Hainan Province |
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| HNA9 | Hap27 | Jianfeng Mountain, Hainan Province |
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| HNB | 8 | HNB1 | Hap20 | Jianfeng Mountain, Hainan Province |
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| HNB2 | Hap28 | Jianfeng Mountain, Hainan Province |
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| HNB3 | Hap29 | Jianfeng Mountain, Hainan Province |
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| HNB4 | Hap30 | Jianfeng Mountain, Hainan Province |
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| HNB5 | Hap8 | Jianfeng Mountain, Hainan Province |
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| HNB6 | Hap31 | Jianfeng Mountain, Hainan Province |
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| HNB7 | Hap8 | Jianfeng Mountain, Hainan Province |
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| HNB8 | Hap8 | Jianfeng Mountain, Hainan Province |
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| GDB | 9 | GDB1 | Hap32 | Patio Hill, Guangdong Province |
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| GDB2 | Hap8 | Patio Hill, Guangdong Province |
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| GDB3 | Hap8 | Patio Hill, Guangdong Province |
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| GDB4 | Hap8 | Patio Hill, Guangdong Province |
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| GDB5 | Hap8 | Patio Hill, Guangdong Province |
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| GDB6 | Hap20 | Patio Hill, Guangdong Province |
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| GDB7 | Hap8 | Patio Hill, Guangdong Province |
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| GDB8 | Hap8 | Patio Hill, Guangdong Province |
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| GDB9 | Hap8 | Patio Hill, Guangdong Province |
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| GXA | 4 | GXA1 | Hap33 | Lingyun County, Guangxi Province |
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| GXA2 | Hap1 | Lingyun County, Guangxi Province |
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| GXA3 | Hap34 | Lingyun County, Guangxi Province |
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| GXA4 | Hap20 | Lingyun County, Guangxi Province |
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| GXB | 8 | GXB1 | Hap35 | Shangsi County, Guangxi Province |
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| GXB2 | Hap20 | Shangsi County, Guangxi Province |
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| GXB3 | Hap32 | Shangsi County, Guangxi Province |
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| GXB4 | Hap1 | Shangsi County, Guangxi Province |
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| GXB5 | Hap5 | Shangsi County, Guangxi Province |
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| GXB6 | Hap5 | Shangsi County, Guangxi Province |
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| GXB7 | Hap20 | Shangsi County, Guangxi Province |
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| GXB8 | Hap36 | Shangsi County, Guangxi Province |
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| XJ | 5 | XJ1 | Hap37 | Altay City, Xinjiang Province |
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| XJ2 | Hap38 | Altay City, Xinjiang Province |
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| XJ3 | Hap39 | Altay City, Xinjiang Province |
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| XJ4 | Hap40 | Altay City, Xinjiang Province |
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| XJ5 | Hap41 | Altay City, Xinjiang Province |
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| YN | 5 | YN1 | Hap42 | Menglong Town, Yunnan Province |
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| YN2 | Hap43 | Menglong Town, Yunnan Province |
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| YN3 | Hap43 | Menglong Town, Yunnan Province |
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| YN4 | Hap44 | Menglong Town, Yunnan Province |
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| YN5 | Hap45 | Menglong Town, Yunnan Province |
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Note: individual code with province initials and A or B and number; A and B are representative of two different morphological variants of respectively.
Figure 1.Distribution of in China, codes same as in Table 1.
The average nucleotide composition of the COI sequences of .
| Group/Species | T (%) | C (%) | A (%) | G (%) | A+T (%) |
|---|---|---|---|---|---|
| YNA | 32.8 | 18.8 | 34.0 | 14.1 | 56.8 |
| YNB | 33.1 | 18.3 | 33.5 | 15.1 | 66.6 |
| ZJA | 32.8 | 19.0 | 34.2 | 14.4 | 67.0 |
| ZJB | 32.9 | 18.9 | 34.1 | 14.1 | 67.0 |
| FJA | 33.0 | 18.3 | 33.8 | 14.9 | 66.8 |
| FJB | 33.0 | 18.4 | 34.1 | 14.5 | 67.1 |
| HNA | 33.1 | 18.4 | 33.9 | 14.6 | 67.0 |
| HNB | 33.0 | 18.3 | 34.0 | 14.7 | 67.0 |
| GDB | 33.0 | 18.3 | 34.0 | 14.7 | 67.0 |
| GXA | 33.0 | 18.4 | 33.9 | 14.7 | 66.9 |
| GXB | 33.0 | 18.3 | 33.9 | 14.8 | 66.9 |
| A total of A | 33.0 | 18.6 | 34.0 | 14.5 | 67.0 |
| A total of B | 33.0 | 18.4 | 33.9 | 14.7 | 66.9 |
| A total of A and B | 33.0 | 18.5 | 33.9 | 14.6 | 66.9 |
|
| 33.7 | 20.9 | 30.6 | 14.8 | 64.3 |
|
| 35.2 | 18.0 | 32.0 | 14.9 | 57.2 |
Kimura 2-parameter genetic distances between groups/species of .
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| YNA | ||||||||||||
| YNB | 0.047 | |||||||||||
| ZJA | 0.041 | 0.063 | ||||||||||
| ZJB | 0.041 | 0.057 | 0.017 | |||||||||
| FJA | 0.045 | 0.011 | 0.063 | 0.056 | ||||||||
| FJB | 0.043 | 0.029 | 0.047 | 0.043 | 0.023 | |||||||
| HNA | 0.042 | 0.031 | 0.049 | 0.046 | 0.026 | 0.031 | ||||||
| HNB | 0.044 | 0.014 | 0.062 | 0.056 | 0.007 | 0.022 | 0.023 | |||||
| GDB | 0.043 | 0.019 | 0.057 | 0.052 | 0.012 | 0.023 | 0.024 | 0.009 | ||||
| GXA | 0.045 | 0.023 | 0.050 | 0.046 | 0.021 | 0.030 | 0.032 | 0.021 | 0.024 | |||
| GXB | 0.045 | 0.022 | 0.055 | 0.052 | 0.019 | 0.031 | 0.032 | 0.020 | 0.023 | 0.028 | ||
|
| 0.207 | 0.219 | 0.206 | 0.204 | 0.212 | 0.206 | 0.210 | 0.210 | 0.209 | 0.212 | 0.213 | |
|
| 0.171 | 0.171 | 0.169 | 0.168 | 0.166 | 0.164 | 0.165 | 0.165 | 0.164 | 0.168 | 0.168 | 0.219 |
Note: the values indicate average intergroup and interspecific distances.
Figure 4.NJ/ME tree of 45 COI haplotypes. The node support: NJ/ME bootstrap values. Bootstrap values of less than 50 are not displayed.
Figure 5.BI/ML tree of 45 COI haplotypes. The node support: BI posterior probabilities/ML bootstrap values. Posterior probabilities and bootstrap values under 0.5 and 50 are shown “-”. “?” means the positions of the different individual of in ML tree is slightly different from those in BI tree.