Literature DB >> 31399242

DNA Methylation: Shared and Divergent Features across Eukaryotes.

Robert J Schmitz1, Zachary A Lewis2, Mary G Goll3.   

Abstract

Chemical modification of nucleotide bases in DNA provides one mechanism for conveying information in addition to the genetic code. 5-methylcytosine (5mC) represents the most common chemically modified base in eukaryotic genomes. Sometimes referred to simply as DNA methylation, in eukaryotes 5mC is most prevalent at CpG dinucleotides and is frequently associated with transcriptional repression of transposable elements. However, 5mC levels and distributions are variable across phylogenies, and emerging evidence suggests that the functions of DNA methylation may be more diverse and complex than was previously appreciated. We summarize the current understanding of DNA methylation profiles and functions in different eukaryotic lineages.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  5-methylcytosine; DNA methylation; DNA methyltransferases; DNMT; gene body DNA methylation; genome integrity; genomic imprinting; heterochromatin

Mesh:

Year:  2019        PMID: 31399242      PMCID: PMC6825889          DOI: 10.1016/j.tig.2019.07.007

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  107 in total

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Journal:  Nat Rev Genet       Date:  2010-03       Impact factor: 53.242

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Authors:  Y Zhou; E B Cambareri; J A Kinsey
Journal:  Mol Genet Genomics       Date:  2001-06       Impact factor: 3.291

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Authors:  J A Yoder; C P Walsh; T H Bestor
Journal:  Trends Genet       Date:  1997-08       Impact factor: 11.639

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Authors:  E Li; T H Bestor; R Jaenisch
Journal:  Cell       Date:  1992-06-12       Impact factor: 41.582

6.  The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA.

Authors:  Jafar Sharif; Masahiro Muto; Shin-ichiro Takebayashi; Isao Suetake; Akihiro Iwamatsu; Takaho A Endo; Jun Shinga; Yoko Mizutani-Koseki; Tetsuro Toyoda; Kunihiro Okamura; Shoji Tajima; Kohzoh Mitsuya; Masaki Okano; Haruhiko Koseki
Journal:  Nature       Date:  2007-11-11       Impact factor: 49.962

7.  A portable signal causing faithful DNA methylation de novo in Neurospora crassa.

Authors:  E U Selker; B C Jensen; G A Richardson
Journal:  Science       Date:  1987-10-02       Impact factor: 47.728

Review 8.  Neurospora crassa, a model system for epigenetics research.

Authors:  Rodolfo Aramayo; Eric U Selker
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-10-01       Impact factor: 10.005

9.  Dnmt1 has an essential function despite the absence of CpG DNA methylation in the red flour beetle Tribolium castaneum.

Authors:  Nora K E Schulz; C Isabel Wagner; Julia Ebeling; Günter Raddatz; Maike F Diddens-de Buhr; Frank Lyko; Joachim Kurtz
Journal:  Sci Rep       Date:  2018-11-07       Impact factor: 4.379

10.  The Genome and Methylome of a Beetle with Complex Social Behavior, Nicrophorus vespilloides (Coleoptera: Silphidae).

Authors:  Christopher B Cunningham; Lexiang Ji; R Axel W Wiberg; Jennifer Shelton; Elizabeth C McKinney; Darren J Parker; Richard B Meagher; Kyle M Benowitz; Eileen M Roy-Zokan; Michael G Ritchie; Susan J Brown; Robert J Schmitz; Allen J Moore
Journal:  Genome Biol Evol       Date:  2015-10-09       Impact factor: 3.416

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  42 in total

1.  Cytosine Methylation Affects the Mutability of Neighboring Nucleotides in Germline and Soma.

Authors:  Vassili Kusmartsev; Magdalena Drożdż; Benjamin Schuster-Böckler; Tobias Warnecke
Journal:  Genetics       Date:  2020-02-20       Impact factor: 4.562

2.  Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin.

Authors:  Sean A Montgomery; Yasuhiro Tanizawa; Bence Galik; Nan Wang; Tasuku Ito; Takako Mochizuki; Svetlana Akimcheva; John L Bowman; Valérie Cognat; Laurence Maréchal-Drouard; Heinz Ekker; Syuan-Fei Hong; Takayuki Kohchi; Shih-Shun Lin; Li-Yu Daisy Liu; Yasukazu Nakamura; Lia R Valeeva; Eugene V Shakirov; Dorothy E Shippen; Wei-Lun Wei; Masaru Yagura; Shohei Yamaoka; Katsuyuki T Yamato; Chang Liu; Frédéric Berger
Journal:  Curr Biol       Date:  2020-01-30       Impact factor: 10.834

3.  Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals.

Authors:  Christopher B Mulholland; Atsuya Nishiyama; Joel Ryan; Ryohei Nakamura; Merve Yiğit; Ivo M Glück; Carina Trummer; Weihua Qin; Michael D Bartoschek; Franziska R Traube; Edris Parsa; Enes Ugur; Miha Modic; Aishwarya Acharya; Paul Stolz; Christoph Ziegenhain; Michael Wierer; Wolfgang Enard; Thomas Carell; Don C Lamb; Hiroyuki Takeda; Makoto Nakanishi; Sebastian Bultmann; Heinrich Leonhardt
Journal:  Nat Commun       Date:  2020-11-24       Impact factor: 14.919

Review 4.  Charting the genomic landscape of seed-free plants.

Authors:  Péter Szövényi; Andika Gunadi; Fay-Wei Li
Journal:  Nat Plants       Date:  2021-04-05       Impact factor: 15.793

5.  [Detection of DNA methylation of HYAL2 gene for differentiating malignant from benign thyroid tumors].

Authors:  Y Yin; H Li; C Yang; M Zhang; X Huang; M Li; R Yang; Z Zhang
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2022-01-20

6.  QSER1 protects DNA methylation valleys from de novo methylation.

Authors:  Gary Dixon; Heng Pan; Dapeng Yang; Bess P Rosen; Therande Jashari; Nipun Verma; Julian Pulecio; Inbal Caspi; Kihyun Lee; Stephanie Stransky; Abigail Glezer; Chang Liu; Marco Rivas; Ritu Kumar; Yahui Lan; Ingrid Torregroza; Chuan He; Simone Sidoli; Todd Evans; Olivier Elemento; Danwei Huangfu
Journal:  Science       Date:  2021-04-09       Impact factor: 47.728

Review 7.  The regulation mechanisms and the Lamarckian inheritance property of DNA methylation in animals.

Authors:  Yulong Li; Yujing Xu; Tongxu Liu; Hengyi Chang; Xiaojun Yang
Journal:  Mamm Genome       Date:  2021-04-15       Impact factor: 2.957

8.  Dnmt2-null sperm block maternal transmission of a paramutant phenotype†.

Authors:  Tian Yu; Yeming Xie; Chong Tang; Yue Wang; Shuiqiao Yuan; Huili Zheng; Wei Yan
Journal:  Biol Reprod       Date:  2021-09-14       Impact factor: 4.285

9.  Targeted bisulfite sequencing for biomarker discovery.

Authors:  Marco Morselli; Colin Farrell; Liudmilla Rubbi; Heather L Fehling; Rebecca Henkhaus; Matteo Pellegrini
Journal:  Methods       Date:  2020-08-02       Impact factor: 3.608

Review 10.  Role of O-Linked N-Acetylglucosamine Protein Modification in Cellular (Patho)Physiology.

Authors:  John C Chatham; Jianhua Zhang; Adam R Wende
Journal:  Physiol Rev       Date:  2020-07-30       Impact factor: 37.312

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