Literature DB >> 20142834

Establishing, maintaining and modifying DNA methylation patterns in plants and animals.

Julie A Law1, Steven E Jacobsen.   

Abstract

Cytosine DNA methylation is a stable epigenetic mark that is crucial for diverse biological processes, including gene and transposon silencing, imprinting and X chromosome inactivation. Recent findings in plants and animals have greatly increased our understanding of the pathways used to accurately target, maintain and modify patterns of DNA methylation and have revealed unanticipated mechanistic similarities between these organisms. Key roles have emerged for small RNAs, proteins with domains that bind methylated DNA and DNA glycosylases in these processes. Drawing on insights from both plants and animals should deepen our understanding of the regulation and biological significance of DNA methylation.

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Year:  2010        PMID: 20142834      PMCID: PMC3034103          DOI: 10.1038/nrg2719

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  183 in total

Review 1.  Histone lysine methylation in genomic imprinting.

Authors:  David N Ciccone; Taiping Chen
Journal:  Epigenetics       Date:  2009-05-11       Impact factor: 4.528

2.  Associations between PIWI proteins and TDRD1/MTR-1 are critical for integrated subcellular localization in murine male germ cells.

Authors:  Kanako Kojima; Satomi Kuramochi-Miyagawa; Shinichiro Chuma; Takashi Tanaka; Norio Nakatsuji; Tohru Kimura; Toru Nakano
Journal:  Genes Cells       Date:  2009-09-07       Impact factor: 1.891

3.  Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi.

Authors:  Nelson C Lau; Toshiro Ohsumi; Mark Borowsky; Robert E Kingston; Michael D Blower
Journal:  EMBO J       Date:  2009-08-27       Impact factor: 11.598

4.  DNA demethylation in hormone-induced transcriptional derepression.

Authors:  Mi-Sun Kim; Takeshi Kondo; Ichiro Takada; Min-Young Youn; Yoko Yamamoto; Sayuri Takahashi; Takahiro Matsumoto; Sally Fujiyama; Yuko Shirode; Ikuko Yamaoka; Hirochika Kitagawa; Ken-ichi Takeyama; Hiroshi Shibuya; Fumiaki Ohtake; Shigeaki Kato
Journal:  Nature       Date:  2009-10-15       Impact factor: 49.962

5.  Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana.

Authors:  Xiaoyu Zhang; Yana V Bernatavichute; Shawn Cokus; Matteo Pellegrini; Steven E Jacobsen
Journal:  Genome Biol       Date:  2009-06-09       Impact factor: 13.583

6.  Proteomic analysis of murine Piwi proteins reveals a role for arginine methylation in specifying interaction with Tudor family members.

Authors:  Vasily V Vagin; James Wohlschlegel; Jun Qu; Zophonias Jonsson; Xinhua Huang; Shinichiro Chuma; Angelique Girard; Ravi Sachidanandam; Gregory J Hannon; Alexei A Aravin
Journal:  Genes Dev       Date:  2009-07-07       Impact factor: 11.361

7.  Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line.

Authors:  Nelson C Lau; Nicolas Robine; Raquel Martin; Wei-Jen Chung; Yuzo Niki; Eugene Berezikov; Eric C Lai
Journal:  Genome Res       Date:  2009-06-18       Impact factor: 9.043

8.  Loss of the Mili-interacting Tudor domain-containing protein-1 activates transposons and alters the Mili-associated small RNA profile.

Authors:  Michael Reuter; Shinichiro Chuma; Takashi Tanaka; Thomas Franz; Alexander Stark; Ramesh S Pillai
Journal:  Nat Struct Mol Biol       Date:  2009-05-24       Impact factor: 15.369

9.  KDM1B is a histone H3K4 demethylase required to establish maternal genomic imprints.

Authors:  David N Ciccone; Hui Su; Sarah Hevi; Frédérique Gay; Hong Lei; Jeffrey Bajko; Guoliang Xu; En Li; Taiping Chen
Journal:  Nature       Date:  2009-09-02       Impact factor: 49.962

10.  Np95 interacts with de novo DNA methyltransferases, Dnmt3a and Dnmt3b, and mediates epigenetic silencing of the viral CMV promoter in embryonic stem cells.

Authors:  Daniela Meilinger; Karin Fellinger; Sebastian Bultmann; Ulrich Rothbauer; Ian Marc Bonapace; Wolfgang E F Klinkert; Fabio Spada; Heinrich Leonhardt
Journal:  EMBO Rep       Date:  2009-10-02       Impact factor: 8.807

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  1348 in total

Review 1.  Genome regulation by long noncoding RNAs.

Authors:  John L Rinn; Howard Y Chang
Journal:  Annu Rev Biochem       Date:  2012       Impact factor: 23.643

2.  Dnmt3a in Sim1 neurons is necessary for normal energy homeostasis.

Authors:  Daisuke Kohno; Syann Lee; Matthew J Harper; Ki Woo Kim; Hideyuki Sone; Tsutomu Sasaki; Tadahiro Kitamura; Guoping Fan; Joel K Elmquist
Journal:  J Neurosci       Date:  2014-11-12       Impact factor: 6.167

3.  Drosophila Piwi functions downstream of piRNA production mediating a chromatin-based transposon silencing mechanism in female germ line.

Authors:  Sidney H Wang; Sarah C R Elgin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-12       Impact factor: 11.205

4.  Zinc finger protein ZFP57 requires its co-factor to recruit DNA methyltransferases and maintains DNA methylation imprint in embryonic stem cells via its transcriptional repression domain.

Authors:  Xiaopan Zuo; Jipo Sheng; Ho-Tak Lau; Carol M McDonald; Monica Andrade; Dana E Cullen; Fong T Bell; Michelina Iacovino; Michael Kyba; Guoliang Xu; Xiajun Li
Journal:  J Biol Chem       Date:  2011-12-05       Impact factor: 5.157

5.  Inhibition of SAH-hydrolase activity during seed germination leads to deregulation of flowering genes and altered flower morphology in tobacco.

Authors:  Jaroslav Fulneček; Roman Matyášek; Ivan Votruba; Antonín Holý; Kateřina Křížová; Aleš Kovařík
Journal:  Mol Genet Genomics       Date:  2011-01-28       Impact factor: 3.291

Review 6.  Smooth muscle cell phenotypic switching in atherosclerosis.

Authors:  Delphine Gomez; Gary K Owens
Journal:  Cardiovasc Res       Date:  2012-03-08       Impact factor: 10.787

7.  Function of the DEMETER DNA glycosylase in the Arabidopsis thaliana male gametophyte.

Authors:  Vera K Schoft; Nina Chumak; Yeonhee Choi; Mike Hannon; Marcelina Garcia-Aguilar; Adriana Machlicova; Lucyna Slusarz; Magdalena Mosiolek; Jin-Sup Park; Guen Tae Park; Robert L Fischer; Hisashi Tamaru
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-25       Impact factor: 11.205

8.  Epigenetic changes through DNA methylation contribute to uterine stromal cell decidualization.

Authors:  Fei Gao; Xinghong Ma; Allison Rusie; Jennifer Hemingway; Alicia B Ostmann; Daesuk Chung; Sanjoy K Das
Journal:  Endocrinology       Date:  2012-10-02       Impact factor: 4.736

Review 9.  Epigenetic effects of green tea polyphenols in cancer.

Authors:  Susanne M Henning; Piwen Wang; Catherine L Carpenter; David Heber
Journal:  Epigenomics       Date:  2013-12       Impact factor: 4.778

10.  An Intramolecular Interaction of UHRF1 Reveals Dual Control for Its Histone Association.

Authors:  Linfeng Gao; Xiao-Feng Tan; Shen Zhang; Tianchen Wu; Zhi-Min Zhang; Hui-Wang Ai; Jikui Song
Journal:  Structure       Date:  2018-01-25       Impact factor: 5.006

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