Literature DB >> 31396624

Adenovirus major core protein condenses DNA in clusters and bundles, modulating genome release and capsid internal pressure.

Natalia Martín-González1, Mercedes Hernando-Pérez2, Gabriela N Condezo2, Marta Pérez-Illana2, Antonio Šiber3, David Reguera4,5, Philomena Ostapchuk6, Patrick Hearing6, Carmen San Martín2, Pedro J de Pablo1,7.   

Abstract

Some viruses package dsDNA together with large amounts of positively charged proteins, thought to help condense the genome inside the capsid with no evidence. Further, this role is not clear because these viruses have typically lower packing fractions than viruses encapsidating naked dsDNA. In addition, it has recently been shown that the major adenovirus condensing protein (polypeptide VII) is dispensable for genome encapsidation. Here, we study the morphology and mechanics of adenovirus particles with (Ad5-wt) and without (Ad5-VII-) protein VII. Ad5-VII- particles are stiffer than Ad5-wt, but DNA-counterions revert this difference, indicating that VII screens repulsive DNA-DNA interactions. Consequently, its absence results in increased internal pressure. The core is slightly more ordered in the absence of VII and diffuses faster out of Ad5-VII- than Ad5-wt fractured particles. In Ad5-wt unpacked cores, dsDNA associates in bundles interspersed with VII-DNA clusters. These results indicate that protein VII condenses the adenovirus genome by combining direct clustering and promotion of bridging by other core proteins. This condensation modulates the virion internal pressure and DNA release from disrupted particles, which could be crucial to keep the genome protected inside the semi-disrupted capsid while traveling to the nuclear pore.
© The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Year:  2019        PMID: 31396624      PMCID: PMC6755088          DOI: 10.1093/nar/gkz687

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  63 in total

1.  Bacteriophage capsids: tough nanoshells with complex elastic properties.

Authors:  I L Ivanovska; P J de Pablo; B Ibarra; G Sgalari; F C MacKintosh; J L Carrascosa; C F Schmidt; G J L Wuite
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-07       Impact factor: 11.205

2.  Mechanics of Viral Chromatin Reveals the Pressurization of Human Adenovirus.

Authors:  Alvaro Ortega-Esteban; Gabriela N Condezo; Ana J Pérez-Berná; Miguel Chillón; S Jane Flint; David Reguera; Carmen San Martín; Pedro J de Pablo
Journal:  ACS Nano       Date:  2015-10-28       Impact factor: 15.881

3.  Differential amplification of adenovirus vectors by flanking the packaging signal with attB/attP-PhiC31 sequences: implications for helper-dependent adenovirus production.

Authors:  Raul Alba; Patrick Hearing; Assumpció Bosch; Miguel Chillon
Journal:  Virology       Date:  2007-06-08       Impact factor: 3.616

4.  Three-dimensional architecture of the bacteriophage phi29 packaged genome and elucidation of its packaging process.

Authors:  Luis R Comolli; Andrew J Spakowitz; Cristina E Siegerist; Paul J Jardine; Shelley Grimes; Dwight L Anderson; Carlos Bustamante; Kenneth H Downing
Journal:  Virology       Date:  2007-11-14       Impact factor: 3.616

5.  Probing the biophysical interplay between a viral genome and its capsid.

Authors:  J Snijder; C Uetrecht; R J Rose; R Sanchez-Eugenia; G A Marti; J Agirre; D M A Guérin; G J L Wuite; A J R Heck; W H Roos
Journal:  Nat Chem       Date:  2013-04-28       Impact factor: 24.427

6.  Adenovirus core protein VII protects the viral genome from a DNA damage response at early times after infection.

Authors:  Kasey A Karen; Patrick Hearing
Journal:  J Virol       Date:  2011-02-23       Impact factor: 5.103

7.  Molecular composition of the adenovirus type 2 virion.

Authors:  J van Oostrum; R M Burnett
Journal:  J Virol       Date:  1985-11       Impact factor: 5.103

8.  Adenovirus transport via direct interaction of cytoplasmic dynein with the viral capsid hexon subunit.

Authors:  K Helen Bremner; Julian Scherer; Julie Yi; Michael Vershinin; Steven P Gross; Richard B Vallee
Journal:  Cell Host Microbe       Date:  2009-12-17       Impact factor: 21.023

9.  Solid-to-fluid DNA transition inside HSV-1 capsid close to the temperature of infection.

Authors:  Udom Sae-Ueng; Dong Li; Xiaobing Zuo; Jamie B Huffman; Fred L Homa; Donald Rau; Alex Evilevitch
Journal:  Nat Chem Biol       Date:  2014-09-07       Impact factor: 15.040

10.  Prevention of overfitting in cryo-EM structure determination.

Authors:  Sjors H W Scheres; Shaoxia Chen
Journal:  Nat Methods       Date:  2012-09       Impact factor: 28.547

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  8 in total

1.  Monitoring SARS-CoV-2 Surrogate TGEV Individual Virions Structure Survival under Harsh Physicochemical Environments.

Authors:  Miguel Cantero; Diego Carlero; Francisco Javier Chichón; Jaime Martín-Benito; Pedro José De Pablo
Journal:  Cells       Date:  2022-05-27       Impact factor: 7.666

2.  Dynamic competition for hexon binding between core protein VII and lytic protein VI promotes adenovirus maturation and entry.

Authors:  Mercedes Hernando-Pérez; Natalia Martín-González; Marta Pérez-Illana; Maarit Suomalainen; Gabriela N Condezo; Philomena Ostapchuk; José Gallardo; Margarita Menéndez; Urs F Greber; Patrick Hearing; Pedro J de Pablo; Carmen San Martín
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-28       Impact factor: 11.205

3.  Fluctuating nonlinear spring theory: Strength, deformability, and toughness of biological nanoparticles from theoretical reconstruction of force-deformation spectra.

Authors:  Farkhad Maksudov; Olga Kononova; Aida Llauró; Alvaro Ortega-Esteban; Trevor Douglas; Gabriela N Condezo; Carmen San Martín; Kenneth A Marx; Gijs J L Wuite; Wouter H Roos; Pedro J de Pablo; Valeri Barsegov
Journal:  Acta Biomater       Date:  2020-12-28       Impact factor: 8.947

Review 4.  Adenovirus Core Proteins: Structure and Function.

Authors:  Shermila Kulanayake; Suresh K Tikoo
Journal:  Viruses       Date:  2021-02-28       Impact factor: 5.048

5.  Electromechanical Photophysics of GFP Packed Inside Viral Protein Cages Probed by Force-Fluorescence Hybrid Single-Molecule Microscopy.

Authors:  Klara Strobl; Ekaterina Selivanovitch; Pablo Ibáñez-Freire; Francisco Moreno-Madrid; Iwan A T Schaap; Rafael Delgado-Buscalioni; Trevor Douglas; Pedro J de Pablo
Journal:  Small       Date:  2022-06-19       Impact factor: 15.153

Review 6.  Adenovirus Structure: What Is New?

Authors:  José Gallardo; Marta Pérez-Illana; Natalia Martín-González; Carmen San Martín
Journal:  Int J Mol Sci       Date:  2021-05-15       Impact factor: 5.923

Review 7.  The Viral Capsid: A Master Key to Access the Host Nucleus.

Authors:  Guillermo Blanco-Rodriguez; Francesca Di Nunzio
Journal:  Viruses       Date:  2021-06-20       Impact factor: 5.048

8.  A Novel Role for PX, a Structural Protein of Fowl Adenovirus Serotype 4 (FAdV4), as an Apoptosis-Inducer in Leghorn Male Hepatocellular Cell.

Authors:  Mingliang Zhao; Xueyan Duan; Yongqiang Wang; Li Gao; Hong Cao; Xiaoqi Li; Shijun J Zheng
Journal:  Viruses       Date:  2020-02-18       Impact factor: 5.048

  8 in total

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