| Literature DB >> 31396200 |
Francis E Sakai-Kawada1, Courtney G Ip2, Kehau A Hagiwara3,4, Jonathan D Awaya1,2.
Abstract
The Prodiginine family consists of primarily red-pigmented tripyrrole secondary metabolites that were first characterized in the Gram-negative bacterial species Serratia marcescens and demonstrates a wide array of biological activities and applications. Derivatives of prodiginine have since been characterized in the marine γ-proteobacterium, Pseudoalteromonas. Although biosynthetic gene clusters involved in prodiginine synthesis display homology among genera, there is an evident structural difference in the resulting metabolites. This review will summarize prodiginine biosynthesis, bioactivity, and gene regulation in Pseudoalteromonas in comparison to the previously characterized species of Serratia, discuss the ecological contributions of Pseudoalteromonas in the marine microbiome and their eukaryotic hosts, and consider the importance of modern functional genomics and classic DNA manipulation to understand the overall prodiginine biosynthesis pathway.Entities:
Keywords: Pseudoalteromonas; marine bacteria; pigments; prodiginines; prodigiosin; secondary metabolites
Year: 2019 PMID: 31396200 PMCID: PMC6667630 DOI: 10.3389/fmicb.2019.01715
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
FIGURE 1(A) Prodiginine biosynthetic pathways: MAP biosynthesis (green), MBC biosynthesis (blue), prodigiosin, cPrG, and HBPG biosynthesis (red), enamine and tambjamine biosynthesis (yellow) (B) Mapping of homologous prodiginine biosynthetic gene clusters in Serratia marcescens (Sm39006), Pseudoalteromonas rubra (Pr6842), Pseudoalteromonas denitrificans (Pd6059), and Pseudoalteromonas tunicata (PtD2). The relationship between pigE and tamH is discussed in the Further insight via functional genomics and DNA manipulation (C) Mapping of homologous cyclizing oxygenases in Streptomyces coelicolor [ScA3(2)], Pseudoalteromonas rubra (Pr6842) and Pseudoalteromonas tunicata (PtD2).
Predicted function of genes involved in prodiginine and tambjamine biosynthesis and their homology among Serratia marcescens (Sm39006), Pseudoalteromonas rubra (Pr6842), Pseudoalteromonas denitrificans (Pd6059), and Pseudoalteromonas tunicata (PtD2).
| Biosynthetic pathway | Predicted protein function | ORFs ( | ||
|---|---|---|---|---|
| MAP | Oxidoreductase | ORF2 | ||
| MAP | Thiamine diphosphate dependent-3-acetyloctanal synthase | ORF4 | ||
| MAP/Enamine | Aminotransferase | ORF5 | ||
| MBC | L-prolyl-PCP dehydrogenase | ORF1 | ||
| MBC | S-adenosyl-L-methionine-dependent methyltransferase | ORF6 | ||
| MBC | Peptidyl carrier protein | ORF7 | ||
| MBC | HBM synthase/aminotransferase | ORF8 | ||
| MBC | L-prolyl-AMP ligase | ORF9 | ||
| MBC | Pyrrolyl-β-ketoacyl-ACP synthase | ORF10 | ||
| MBC | Hypothetical protein | ORF11 | ||
| MBC | Phosphopantetheinyl transferase | ORF12 | ||
| MBC | HBM oxidase/dehydrogenase | ORF13 | ||
| MBC | Oxidoreductase | |||
| Terminal Condensation | Terminal Condensing Enzyme | ORF3 | ||
| Cyclization | Putative oxidase | PRUB680 b | ||
| Enamine | AMP binding protein | |||
| Enamine | Putative dehydrogenase | |||
| Tambjamine | Hypothetical protein | |||
| Tambjamine | Putative permease | |||
| Tambjamine | Putative permease | |||
| Tambjamine | Putative ABC transporter | |||
| Tambjamine | Hypothetical protein | |||