| Literature DB >> 31388594 |
Y Shyma Mary1, Y Sheena Mary1, K S Resmi1, Renjith Thomas2.
Abstract
The organic moleculeEntities:
Keywords: DFT; FT-IR; FT-Raman; MEP; Molecular docking; Organic chemistry; Pharmaceutical chemistry; Theoretical chemistry
Year: 2019 PMID: 31388594 PMCID: PMC6667822 DOI: 10.1016/j.heliyon.2019.e02175
Source DB: PubMed Journal: Heliyon ISSN: 2405-8440
Fig. 1Optimized geometry of (a) tenoxicam, (b) piroxicam and (c) isoxicam.
Fig. 2HOMO-LUMO plots of (a) tenoxicam, (b) piroxicam and (c) isoxicam.
Chemical descriptors.
| Compound | HOMO | LUMO | I = -EHOMO | A = -ELUMO | Gap | η=(I-A)/2 | μ = -(I + A)/2 | ω = μ2/2η |
|---|---|---|---|---|---|---|---|---|
| Tenoxicam | -7.837 | -4.931 | 7.837 | 4.931 | 2.908 | 1.454 | -6.384 | 14.015 |
| Piroxicam | -8.004 | -5.315 | 8.004 | 5.315 | 2.689 | 1.345 | -6.660 | 16.489 |
| Isoxicam | -7.867 | -5.268 | 7.867 | 5.268 | 2.599 | 1.300 | -6.568 | 16.592 |
Fig. 3MEP plots of (a) tenoxicam, (b) piroxicam and (c) isoxicam.
Vibrational assignments.
| 2.1: Tenoxicam | |||||
|---|---|---|---|---|---|
| B3LYP/CC-pVDZ (5D, 7F) | IR | Raman | Assignments | ||
| υ(cm−1) | IRI | RA | υ(cm−1) | υ(cm−1) | - |
| 3411 | 61.99 | 188.9 | 3390 | - | υNH |
| 3132 | 4.19 | 49.90 | 3145 | 3140 | υCH |
| 3109 | 3.53 | 82.61 | 3105 | 3110 | υCH |
| 3084 | 16.36 | 311.8 | 3088 | 3085 | υCH |
| 2990 | 13.91 | 62.94 | 3000 | - | υCH3 |
| 2902 | 31.62 | 73.61 | 2915 | 2920 | υCH3 |
| 1614 | 137.2 | 371.6 | 1610 | 1605 | υC=O |
| 1566 | 142.5 | 303.6 | 1563 | - | υRingI |
| 1501 | 105.7 | 1950.4 | - | 1500 | υC=CRingII |
| 1499 | 368.0 | 34.43 | 1495 | - | δNH |
| 1422 | 18.88 | 562.4 | 1422 | 1424 | υC=CRingIII |
| 1406 | 2.99 | 12.86 | - | 1404 | δCH3 |
| 1381 | 2.03 | 241.3 | - | 1380 | δOH |
| 1364 | 6.11 | 127.2 | 1370 | - | δCH3 |
| 1344 | 152.0 | 627.7 | 1345 | 1347 | υRingIII |
| 1315 | 78.31 | 80.18 | 1320 | - | δCH |
| 1292 | 92.89 | 74.80 | 1296 | 1290 | υRingI |
| 1253 | 176.2 | 5.31 | 1251 | - | υSO2 |
| 1247 | 27.41 | 126.2 | - | 1249 | υCN |
| 1201 | 58.53 | 299.0 | 1200 | 1200 | υCN |
| 1186 | 79.13 | 141.0 | - | 1188 | υCN |
| 1186 | 79.13 | 141.0 | - | 1188 | υCN |
| 1141 | 31.75 | 18.56 | 1148 | 1147 | δCH |
| 1130 | 26.31 | 47.27 | 1138 | - | δCH3 |
| 1102 | 9.25 | 72.35 | 1100 | 1100 | υCC |
| 1082 | 7.35 | 5.65 | 1085 | - | δCH3 |
| 1046 | 15.54 | 48.98 | 1048 | 1050 | δCH |
| 1009 | 39.54 | 3.08 | 995 | 1005 | υCN |
| 978 | 0.28 | 0.56 | 976 | - | γCH |
| 905 | 83.51 | 0.71 | 903 | - | γOH |
| 895 | 14.22 | 2.80 | - | 893 | δC=O |
| 870 | 6.93 | 27.68 | - | 871 | γCH |
| 865 | 2.01 | 2.35 | 858 | - | γCH |
| 839 | 10.64 | 11.24 | 840 | 840 | υRingI |
| 781 | 19.91 | 4.33 | 785 | - | υCS |
| 769 | 38.51 | 0.77 | - | 770 | τRingI |
| 763 | 16.96 | 14.04 | 760 | 755 | υSN |
| 735 | 40.39 | 8.93 | 737 | - | τRingI |
| 703 | 38.57 | 2.00 | 703 | 700 | γNH |
| 662 | 11.20 | 6.26 | - | 668 | υCS |
| 656 | 7.09 | 18.92 | 653 | 645 | υCS |
| 588 | 79.05 | 7.45 | 590 | 580 | δRingI |
| 531 | 16.05 | 3.06 | 535 | 536 | δSO2 |
| 513 | 35.12 | 6.20 | - | 508 | δSO2 |
| 480 | 17.16 | 1.48 | 478 | 478 | τRingII |
| 455 | 3.03 | 1.97 | 448 | 452 | τRingIII |
| 406 | 2.37 | 0.78 | 403 | 404 | τRingI |
| 305 | 2.51 | 11.22 | - | 303 | τRingIII |
| 246 | 1.65 | 0.96 | - | 250 | δRingIII |
| 171 | 2.90 | 2.94 | - | 173 | τCH3 |
υ-stretching; δ-in-plane deformation; γ-out-of-plane deformation; τ-torsion;; IRI-IR intensity(KM/Mole); RA-Raman activity(Ǻ4/amu); RingI-pyridine ring; RingII-Ring having SO2; RingIII-Five member ring.
υ-stretching; δ-in-plane deformation; γ-out-of-plane deformation; τ-torsion;; IRI-IR intensity(KM/Mole); RA-Raman activity(Ǻ4/amu); RingI-pyridine ring; RingII-Ring having SO2; RingIII-Phenyl ring.
υ-stretching; δ-in-plane deformation; γ-out-of-plane deformation; τ-torsion;; IRI-IR intensity(KM/Mole); RA-Raman activity(Ǻ4/amu); RingI- Five member ring; RingII-Ring having SO2; RingIII-Phenyl ring.
PASS prediction for the activity spectrum. Pa represents probability to be active and Pi represents probability to be inactive.
| Pa | Pi | Activity |
|---|---|---|
| 0.934 | 0.004 | Antiinflammatory |
| 0.904 | 0.004 | CYP2C9 substrate |
| 0.898 | 0.002 | Gout treatment |
| 0.862 | 0.005 | Analgesic |
| 0.853 | 0.005 | Antiarthritic |
| 0.794 | 0.010 | CYP2C substrate |
| 0.774 | 0.004 | Non-steroidal antiinflammatory agent |
| 0.759 | 0.003 | Peroxidase substrate |
| 0.729 | 0.005 | Analgesic, non-opioid |
| 0.708 | 0.004 | CYP2C9 inhibitor |
Fig. 4The interactive plot of docked ligands (a) tenoxicam with 3DY9 (b) tenoxicam with 4NZ2 (c) tenoxicam with 2AYR (d) piroxicam with 3DY9 (e) piroxicam with 4NZ2 (f) piroxicam with 2AYR and (g) isoxicam with 3DY9 (h) isoxicam with 4NZ2 (i) isoxicam with 2AYR.
Fig. 5The docked ligands (a) tenoxicam with 3DY9 (b) tenoxicam with 4NZ2 (c) tenoxicam with 2AYR (d) piroxicam with 3DY9 (e) piroxicam with 4NZ2 (f) piroxicam with 2AYR and (g) isoxicam with 3DY9 (h) isoxicam with 4NZ2 (i) isoxicam with 2AYR at the active sites of proteins.
The top ten conformation of the complex candidate of ligands.
| No. | Global | Attractive | Repulsive | Atomic Contact |
|---|---|---|---|---|
| Energy | Vdw | Vdw | Energy | |
| 1 | -24.54 | -10.31 | 4.74 | -10.59 |
| 2 | -23.13 | -9.64 | 3.26 | -9.97 |
| 3 | -20.96 | -8.23 | 3.68 | -9.86 |
| 4 | -19.95 | -8.81 | 3.95 | -8.85 |
| 5 | -19.00 | -9.76 | 4.36 | -7.27 |
| 6 | -18.42 | -8.52 | 3.30 | -6.46 |
| 7 | -18.03 | -10.12 | 4.77 | -6.69 |
| 8 | -17.80 | -8.15 | 1.05 | -5.16 |
| 9 | -17.65 | -6.41 | 1.11 | -6.73 |
| 10 | -16.05 | -11.04 | 6.24 | -4.37 |
| 1 | -34.66 | -16.32 | 12.43 | -13.55 |
| 2 | -31.94 | -17.60 | 9.76 | -8.63 |
| 3 | -31.87 | -15.12 | 3.04 | -81.0 |
| 4 | -31.68 | -14.01 | 4.05 | -10.74 |
| 5 | -31.34 | -15.29 | 7.15 | -10.20 |
| 6 | -31.01 | -13.51 | 2.10 | -8.87 |
| 7 | -30.53 | -13.98 | 9.73 | -12.44 |
| 8 | -29.49 | -15.72 | 4.58 | -6.27 |
| 9 | -29.32 | -12.55 | 2.09 | -9.18 |
| 10 | -28.73 | -18.44 | 5.89 | -6.08 |
| 1 | -41.31 | -17.01 | 4.57 | -14.33 |
| 2 | -40.33 | -15.82 | 3.69 | -12.34 |
| 3 | -37.62 | -15.70 | 5.96 | -12.74 |
| 4 | -37.42 | -15.77 | 4.36 | -13.93 |
| 5 | -36.79 | -14.47 | 4.89 | -12.86 |
| 6 | -36.31 | -14.68 | 7.37 | -14.24 |
| 7 | -35.81 | -16.05 | 6.72 | -12.25 |
| 8 | -33.94 | -13.08 | 3.54 | -11.40 |
| 9 | -33.89 | -14.92 | 2.07 | -10.81 |
| 10 | -33.11 | -16.88 | 7.67 | -11.98 |
| 1 | -21.21 | -9.13 | 1.14 | -6.21 |
| 2 | -19.67 | -9.40 | 1.72 | -6.40 |
| 3 | -19.37 | -8.70 | 2.61 | -8.16 |
| 4 | -19.32 | -9.50 | 1.49 | -5.22 |
| 5 | -19.26 | -9.60 | 4.33 | -7.93 |
| 6 | -18.28 | -8.85 | 4.22 | -7.68 |
| 7 | -16.16 | -6.83 | 2.99 | -6.25 |
| 8 | -16.08 | -11.30 | 3.95 | -3.14 |
| 9 | -15.74 | -11.86 | 10.39 | -5.40 |
| 10 | -14.54 | -7.95 | 3.79 | -6.54 |
| 1 | -31.03 | -15.28 | 3.95 | -7.96 |
| 2 | -30.98 | -12.00 | 1.99 | -9.53 |
| 3 | -30.62 | -15.97 | 2.28 | -6.32 |
| 4 | -30.06 | -19.11 | 4.45 | -5.50 |
| 5 | -30.05 | -16.21 | 8.99 | -10.29 |
| 6 | -29.95 | -16.89 | 4.80 | -5.55 |
| 7 | -29.60 | -13.91 | 2.61 | -8.22 |
| 8 | -29.33 | -14.44 | 5.50 | -9.38 |
| 9 | -28.70 | -16.15 | 3.84 | -5.78 |
| 10 | -28.66 | -15.18 | 4.96 | -7.65 |
| 1 | -37.85 | -17.33 | 5.90 | -12.41 |
| 2 | -36.08 | -16.48 | 4.57 | -10.83 |
| 3 | -35.96 | -17.16 | 4.34 | -11.19 |
| 4 | -34.04 | -14.50 | 4.95 | -11.94 |
| 5 | -33.99 | -15.73 | 5.94 | -12.53 |
| 6 | -33.99 | -15.11 | 6.47 | -11.55 |
| 7 | -33.51 | -3.65 | 3.54 | -11.09 |
| 8 | -33.12 | -15.10 | 2.21 | -7.97 |
| 9 | -31.94 | -14.23 | 1.24 | -7.53 |
| 10 | -31.02 | -12.45 | 1.87 | -10.00 |
| 1 | -26.00 | -11.53 | 3.63 | -10.59 |
| 2 | -25.72 | -13.30 | 3.88 | -8.13 |
| 3 | -23.43 | -8.48 | 1.41 | -8.64 |
| 4 | -19.41 | -11.68 | 5.27 | -5.59 |
| 5 | -19.35 | -9.10 | 2.36 | -7.89 |
| 6 | -19.18 | -10.49 | 3.90 | -6.91 |
| 7 | -19.07 | -8.18 | 3.38 | -7.26 |
| 8 | -18.81 | -8.40 | 4.97 | -8.39 |
| 9 | -18.60 | -12.28 | 7.80 | -5.68 |
| 10 | -18.36 | -7.93 | 0.54 | -7.12 |
| 1 | -37.12 | -16.16 | 2.35 | -10.90 |
| 2 | -34.72 | -13.37 | 2.18 | -12.16 |
| 3 | -33.12 | -12.59 | 0.90 | -9.56 |
| 4 | -32.08 | -15.24 | 5.98 | -9.06 |
| 5 | -31.53 | -15.55 | 4.47 | -8.39 |
| 6 | -29.81 | -16.07 | 2.44 | -5.55 |
| 7 | -29.54 | -13.01 | 0.78 | -8.32 |
| 8 | -28.60 | -16.09 | 8.45 | -8.67 |
| 9 | -27.16 | -14.20 | 5.24 | -8.46 |
| 10 | -27.05 | -12.26 | 2.32 | -8.50 |
| 1 | -42.31 | -19.70 | 5.02 | -12.99 |
| 2 | -38.46 | -16.62 | 2.34 | -9.76 |
| 3 | -34.63 | -14.96 | 2.06 | -9.48 |
| 4 | -34.52 | -15.48 | 3.75 | -10.61 |
| 5 | -33.93 | -14.41 | 1.86 | -9.98 |
| 6 | -33.62 | -15.27 | 3.42 | -11.22 |
| 7 | -30.98 | -14.96 | 7.86 | -9.62 |
| 8 | -30.94 | -12.87 | 5.08 | -12.59 |
| 9 | -29.64 | -11.61 | 3.41 | -10.35 |
| 10 | -29.61 | -15.41 | 4.42 | -9.28 |