Literature DB >> 20949907

First-principles prediction of the pK(a)s of anti-inflammatory oxicams.

Junming Ho1, Michelle L Coote, Marco Franco-Pérez, Rodolfo Gómez-Balderas.   

Abstract

The gas- and aqueous-phase acidities of a series of oxicams have been computed by combining M05-2X/6-311+G(3df,2p) gas-phase free energies with solvation free energies from the CPCM-UAKS, COSMO-RS, and SMD solvent models. To facilitate accurate gas-phase calculations, a benchmarking study was further carried out to assess the performance of various density functional theory methods against the high-level composite method G3MP2(+). Oxicams are typically diprotic acids, and several tautomers are possible in each protonation state. The direct thermodynamic cycle and the proton exchange scheme have been employed to compute the microscopic pK(a)s on both solution- and gas-phase equilibrium conformers, and these were combined to yield the macroscopic pK(a) values. Using the direct cycle of pK(a) calculation, the CPCM-UAKS model delivered reasonably accurate results with MAD ~ 1, whereas the SMD and COSMO-RS models' performance was less satisfactory with MAD ~ 3. Comparison with experiment also indicates that direct cycle calculations based on solution conformers generally deliver better accuracy. The proton exchange cycle affords further improvement for all solvent models through systematic error cancellation and therefore provides better reliability for the pK(a) prediction of compounds of these types. The latter approach has been applied to predict the pK(a)s of several recently synthesized oxicam derivatives.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20949907     DOI: 10.1021/jp107890p

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  5 in total

1.  Oxicams bind in a novel mode to the cyclooxygenase active site via a two-water-mediated H-bonding Network.

Authors:  Shu Xu; Daniel J Hermanson; Surajit Banerjee; Kebreab Ghebreselasie; Gina M Clayton; R Michael Garavito; Lawrence J Marnett
Journal:  J Biol Chem       Date:  2014-01-14       Impact factor: 5.157

Review 2.  Oxicams, a class of nonsteroidal anti-inflammatory drugs and beyond.

Authors:  Shu Xu; Carol A Rouzer; Lawrence J Marnett
Journal:  IUBMB Life       Date:  2014-12-23       Impact factor: 3.885

3.  Prediction of pKa values using the PM6 semiempirical method.

Authors:  Jimmy C Kromann; Frej Larsen; Hadeel Moustafa; Jan H Jensen
Journal:  PeerJ       Date:  2016-08-11       Impact factor: 2.984

4.  One-Electron Reduction Potentials: Calibration of Theoretical Protocols for Morita⁻Baylis⁻Hillman Nitroaromatic Compounds in Aprotic Media.

Authors:  Amauri Francisco da Silva; Antonio João da Silva Filho; Mário L A A Vasconcellos; Otávio Luís de Santana
Journal:  Molecules       Date:  2018-08-24       Impact factor: 4.411

5.  DFT and molecular docking investigations of oxicam derivatives.

Authors:  Y Shyma Mary; Y Sheena Mary; K S Resmi; Renjith Thomas
Journal:  Heliyon       Date:  2019-07-30
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.