Literature DB >> 3138426

An evolutionary tree for invertebrate globin sequences.

M Goodman1, J Pedwaydon, J Czelusniak, T Suzuki, T Gotoh, L Moens, F Shishikura, D Walz, S Vinogradov.   

Abstract

A phylogenetic tree was constructed from 245 globin amino acid sequences. Of the six plant globins, five represented the Leguminosae and one the Ulmaceae. Among the invertebrate sequences, 7 represented the phylum Annelida, 13 represented Insecta and Crustacea of the phylum Arthropoda, and 6 represented the phylum Mollusca. Of the vertebrate globins, 4 represented the Agnatha and 209 represented the Gnathostomata. A common alignment was achieved for the 245 sequences using the parsimony principle, and a matrix of minimum mutational distances was constructed. The most parsimonious phylogenetic tree, i.e., the one having the lowest number of nucleotide substitutions that cause amino acid replacements, was obtained employing clustering and branch-swapping algorithms. Based on the available fossil record, the earliest split in the ancestral metazoan lineage was placed at 680 million years before present (Myr BP), the origin of vertebrates was placed at 510 Myr BP, and the separation of the Chondrichthyes and the Osteichthyes was placed at 425 Myr BP. Local "molecular clock" calculations were used to date the branch points on the descending branches of the various lineages within the plant and invertebrate portions of the tree. The tree divided the 245 sequences into five distinct clades that corresponded exactly to the five groups plants, annelids, arthropods, molluscs, and vertebrates. Furthermore, the maximum parsimony tree, in contrast to the unweighted pair group and distance Wagner trees, was consistent with the available fossil record and supported the hypotheses that the primitive hemoglobin of metazoans was monomeric and that the multisubunit extracellular hemoglobins found among the Annelida and the Arthropoda represent independently derived states.

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Year:  1988        PMID: 3138426     DOI: 10.1007/bf02100080

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  43 in total

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Authors:  G W Moore; M Goodman
Journal:  J Mol Evol       Date:  1977-04-29       Impact factor: 2.395

Review 2.  Regulation of oxygen affinity of hemoglobin: influence of structure of the globin on the heme iron.

Authors:  M F Perutz
Journal:  Annu Rev Biochem       Date:  1979       Impact factor: 23.643

Review 3.  Construction of phylogenetic trees.

Authors:  W M Fitch; E Margoliash
Journal:  Science       Date:  1967-01-20       Impact factor: 47.728

4.  The amino acid sequence of a dimeric myoglobin from the gastropod mollusc, Busycon canaliculatum L.

Authors:  A G Bonner; R A Laursen
Journal:  FEBS Lett       Date:  1977-02-01       Impact factor: 4.124

5.  The eta-globin gene. Its long evolutionary history in the beta-globin gene family of mammals.

Authors:  M Goodman; B F Koop; J Czelusniak; M L Weiss
Journal:  J Mol Biol       Date:  1984-12-25       Impact factor: 5.469

6.  The amino acid sequence of a major polypeptide chain of earthworm hemoglobin.

Authors:  R L Garlick; A F Riggs
Journal:  J Biol Chem       Date:  1982-08-10       Impact factor: 5.157

7.  Two globin strains in the giant annelid extracellular haemoglobins.

Authors:  T Gotoh; F Shishikura; J W Snow; K I Ereifej; S N Vinogradov; D A Walz
Journal:  Biochem J       Date:  1987-01-15       Impact factor: 3.857

8.  Amino acid sequence of myoglobin from the mollusc Dolabella auricularia.

Authors:  T Suzuki
Journal:  J Biol Chem       Date:  1986-03-15       Impact factor: 5.157

9.  Amino acid sequence of dimeric myoglobin from Cerithidea rhizophorarum.

Authors:  T Takagi; M Tobita; K Shikama
Journal:  Biochim Biophys Acta       Date:  1983-05-30

10.  Cooperative dimeric and tetrameric clam haemoglobins are novel assemblages of myoglobin folds.

Authors:  W E Royer; W E Love; F F Fenderson
Journal:  Nature       Date:  1985 Jul 18-24       Impact factor: 49.962

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  26 in total

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Authors:  G D McDonald; L Davidson; G B Kitto
Journal:  J Protein Chem       Date:  1992-02

Review 2.  The role of robustness in phenotypic adaptation and innovation.

Authors:  Andreas Wagner
Journal:  Proc Biol Sci       Date:  2012-01-04       Impact factor: 5.349

3.  Isolation and sequencing of a cDNA for an unusual hemoglobin from the parasitic nematode Pseudoterranova decipiens.

Authors:  B Dixon; B Walker; W Kimmins; B Pohajdak
Journal:  Proc Natl Acad Sci U S A       Date:  1991-07-01       Impact factor: 11.205

4.  A comparison of several similarity indices used in the classification of protein sequences: a multivariate analysis.

Authors:  C Landès; A Hénaut; J L Risler
Journal:  Nucleic Acids Res       Date:  1992-07-25       Impact factor: 16.971

5.  Molecular cloning and expression of four actin isoforms during Artemia development.

Authors:  M T Macias; L Sastre
Journal:  Nucleic Acids Res       Date:  1990-09-11       Impact factor: 16.971

6.  Mammalian dihydroorotase: nucleotide sequence, peptide sequences, and evolution of the dihydroorotase domain of the multifunctional protein CAD.

Authors:  J P Simmer; R E Kelly; A G Rinker; B H Zimmermann; J L Scully; H Kim; D R Evans
Journal:  Proc Natl Acad Sci U S A       Date:  1990-01       Impact factor: 11.205

7.  What can 18S rDNA do for bivalve phylogeny?

Authors:  G Steiner; M Müller
Journal:  J Mol Evol       Date:  1996-07       Impact factor: 2.395

Review 8.  A brief history of hemoglobins: plant, animal, protist, and bacteria.

Authors:  R C Hardison
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-11       Impact factor: 11.205

9.  Primary structure of a constituent polypeptide chain (AIII) of the giant haemoglobin from the deep-sea tube worm Lamellibrachia. A possible H2S-binding site.

Authors:  T Suzuki; T Takagi; S Ohta
Journal:  Biochem J       Date:  1990-02-15       Impact factor: 3.857

10.  Interdomain linkage in the polymeric hemoglobin molecule of Artemia.

Authors:  C N Trotman; A M Manning; J A Bray; A M Jellie; L Moens; W P Tate
Journal:  J Mol Evol       Date:  1994-06       Impact factor: 2.395

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