Literature DB >> 31358115

Cell-sized confinement controls generation and stability of a protein wave for spatiotemporal regulation in cells.

Shunshi Kohyama1, Natsuhiko Yoshinaga2,3, Miho Yanagisawa4, Kei Fujiwara1, Nobuhide Doi1.   

Abstract

The Min system, a system that determines the bacterial cell division plane, uses changes in the localization of proteins (a Min wave) that emerges by reaction-diffusion coupling. Although previous studies have shown that space sizes and boundaries modulate the shape and speed of Min waves, their effects on wave emergence were still elusive. Here, by using a microsized fully confined space to mimic live cells, we revealed that confinement changes the conditions for the emergence of Min waves. In the microsized space, an increased surface-to-volume ratio changed the localization efficiency of proteins on membranes, and therefore, suppression of the localization change was necessary for the stable generation of Min waves. Furthermore, we showed that the cell-sized space strictly limits parameters for wave emergence because confinement inhibits both the instability and excitability of the system. These results show that confinement of reaction-diffusion systems has the potential to control spatiotemporal patterns in live cells.
© 2019, Kohyama et al.

Entities:  

Keywords:  E. coli; Min system; artificial cells; confinement; physics of living systems; protein wave; reaction-diffusion; spatiotemporal regulation

Mesh:

Substances:

Year:  2019        PMID: 31358115      PMCID: PMC6667215          DOI: 10.7554/eLife.44591

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  47 in total

Review 1.  Spatial control of bacterial division-site placement.

Authors:  Lawrence Rothfield; Aziz Taghbalout; Yu-Ling Shih
Journal:  Nat Rev Microbiol       Date:  2005-12       Impact factor: 60.633

2.  Turbulence due to spiral breakup in a continuous excitable medium.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1993-09

3.  Non-specific interactions between soluble and induce irreversible changes in the properties of bilayers.

Authors:  Francesca Ruggeri; Fan Zhang; Tania Lind; Erica D Bruce; Boris L T Lau; Marité Cárdenas
Journal:  Soft Matter       Date:  2013-03-27       Impact factor: 3.679

4.  MinE conformational dynamics regulate membrane binding, MinD interaction, and Min oscillation.

Authors:  Kyung-Tae Park; Maria T Villar; Antonio Artigues; Joe Lutkenhaus
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-26       Impact factor: 11.205

5.  Propagation of MinCDE waves on free-standing membranes.

Authors:  Ariadna Martos; Zdenek Petrasek; Petra Schwille
Journal:  Environ Microbiol       Date:  2013-10-31       Impact factor: 5.491

6.  Oscillations of Min-proteins in micropatterned environments: a three-dimensional particle-based stochastic simulation approach.

Authors:  Max Hoffmann; Ulrich S Schwarz
Journal:  Soft Matter       Date:  2014-04-14       Impact factor: 3.679

Review 7.  Enzymatic reactions in confined environments.

Authors:  Andreas Küchler; Makoto Yoshimoto; Sandra Luginbühl; Fabio Mavelli; Peter Walde
Journal:  Nat Nanotechnol       Date:  2016-05-05       Impact factor: 39.213

Review 8.  Characteristic behavior of crowding macromolecules confined in cell-sized droplets.

Authors:  Miho Yanagisawa; Takahiro Sakaue; Kenichi Yoshikawa
Journal:  Int Rev Cell Mol Biol       Date:  2014       Impact factor: 6.813

9.  Division site placement in E.coli: mutations that prevent formation of the MinE ring lead to loss of the normal midcell arrest of growth of polar MinD membrane domains.

Authors:  Yu-Ling Shih; Xiaoli Fu; Glenn F King; Trung Le; Lawrence Rothfield
Journal:  EMBO J       Date:  2002-07-01       Impact factor: 11.598

10.  Division accuracy in a stochastic model of Min oscillations in Escherichia coli.

Authors:  Rex A Kerr; Herbert Levine; Terrence J Sejnowski; Wouter-Jan Rappel
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-30       Impact factor: 11.205

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  13 in total

Review 1.  Engineering spatiotemporal organization and dynamics in synthetic cells.

Authors:  Alessandro Groaz; Hossein Moghimianavval; Franco Tavella; Tobias W Giessen; Anthony G Vecchiarelli; Qiong Yang; Allen P Liu
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2020-11-21

2.  Bulk-surface coupling identifies the mechanistic connection between Min-protein patterns in vivo and in vitro.

Authors:  Fridtjof Brauns; Grzegorz Pawlik; Jacob Halatek; Jacob Kerssemakers; Erwin Frey; Cees Dekker
Journal:  Nat Commun       Date:  2021-06-03       Impact factor: 14.919

3.  C-terminal eYFP fusion impairs Escherichia coli MinE function.

Authors:  Navaneethan Palanisamy; Mehmet Ali Öztürk; Emir Bora Akmeriç; Barbara Di Ventura
Journal:  Open Biol       Date:  2020-05-27       Impact factor: 6.411

4.  Self-organization Assay for Min Proteins of Escherichia coli in Micro-droplets Covered with Lipids.

Authors:  Shunshi Kohyama; Kei Fujiwara; Natsuhiko Yoshinaga; Nobuhide Doi
Journal:  Bio Protoc       Date:  2020-03-20

5.  Trends and Outlooks in Synthetic Biology: A Special Issue for Celebrating 10 Years of Life and Its Landmarks.

Authors:  Norizaku Ichihashi; Pasquale Stano
Journal:  Life (Basel)       Date:  2022-01-26

6.  Regulation of spatiotemporal patterning in artificial cells by a defined protein expression system.

Authors:  Aoi Yoshida; Shunshi Kohyama; Kei Fujiwara; Saki Nishikawa; Nobuhide Doi
Journal:  Chem Sci       Date:  2019-10-16       Impact factor: 9.825

7.  Pattern formation in reaction-diffusion system on membrane with mechanochemical feedback.

Authors:  Naoki Tamemoto; Hiroshi Noguchi
Journal:  Sci Rep       Date:  2020-11-11       Impact factor: 4.379

8.  Delayed global feedback in the genesis and stability of spatiotemporal excitation patterns in paced biological excitable media.

Authors:  Zhen Song; Zhilin Qu
Journal:  PLoS Comput Biol       Date:  2020-10-05       Impact factor: 4.475

9.  Transcription and Translation in Cytomimetic Protocells Perform Most Efficiently at Distinct Macromolecular Crowding Conditions.

Authors:  Mahesh A Vibhute; Mark H Schaap; Roel J M Maas; Frank H T Nelissen; Evan Spruijt; Hans A Heus; Maike M K Hansen; Wilhelm T S Huck
Journal:  ACS Synth Biol       Date:  2020-10-05       Impact factor: 5.110

10.  Activation of a diluted E. coli cell-free transcription-translation system within liposomes by hypertonic concentration.

Authors:  Yukino Matsui; Toshiki Akui; Nobuhide Doi; Kei Fujiwara
Journal:  STAR Protoc       Date:  2021-12-11
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