Literature DB >> 24380596

Characteristic behavior of crowding macromolecules confined in cell-sized droplets.

Miho Yanagisawa1, Takahiro Sakaue2, Kenichi Yoshikawa3.   

Abstract

We describe the unique behavior of long DNA molecules in a cell-sized confinement by using cell-sized water-in-oil droplets coated with a lipid layer. It is shown that DNA molecules exhibit specific localization on lipid membranes accompanied by conformational transitions depending on the spatial size of droplets as well as the chemical structure of lipids coating the droplets. Interestingly, such specific behavior of DNA molecules causes on/off switching of transcriptional activity. We demonstrate the effect of crowding by adapting various kinds of macromolecules with different electronic charges and flexibility. As recently reported, it is shown that gene expression is remarkably accelerated in cell-sized confinement. We theoretically discuss the abovementioned unique behavior of DNA molecules in a micro-confinement. Further study in comparison with the actual behavior of DNA molecules in a living cellular system is expected to be fruitful.
© 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Cell-sized confinement; DNA structure and function; Depletion effect; Micro-thermodynamics; Microphase separation; Transcription

Mesh:

Substances:

Year:  2014        PMID: 24380596     DOI: 10.1016/B978-0-12-800046-5.00007-2

Source DB:  PubMed          Journal:  Int Rev Cell Mol Biol        ISSN: 1937-6448            Impact factor:   6.813


  7 in total

1.  Multiple patterns of polymer gels in microspheres due to the interplay among phase separation, wetting, and gelation.

Authors:  Miho Yanagisawa; Shinpei Nigorikawa; Takahiro Sakaue; Kei Fujiwara; Masayuki Tokita
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-27       Impact factor: 11.205

2.  Unique phase behavior in cell size space: synergistic effect of molecular crowding and confinement.

Authors:  Chiho Watanabe; Miho Yanagisawa
Journal:  Biophys Rev       Date:  2020-04-10

3.  Cell-sized confinement controls generation and stability of a protein wave for spatiotemporal regulation in cells.

Authors:  Shunshi Kohyama; Natsuhiko Yoshinaga; Miho Yanagisawa; Kei Fujiwara; Nobuhide Doi
Journal:  Elife       Date:  2019-07-30       Impact factor: 8.140

4.  DNA cytoskeleton for stabilizing artificial cells.

Authors:  Chikako Kurokawa; Kei Fujiwara; Masamune Morita; Ibuki Kawamata; Yui Kawagishi; Atsushi Sakai; Yoshihiro Murayama; Shin-Ichiro M Nomura; Satoshi Murata; Masahiro Takinoue; Miho Yanagisawa
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-26       Impact factor: 11.205

5.  Macromolecule crowding effects on the phase separation of semi-flexible polymer in spherical confined space.

Authors:  Hongchang Wang; Lingyun Gu; Rongri Tan; Xiaotian Ma; Xun Zhou; Yanhui Liu
Journal:  J Biol Phys       Date:  2020-07-01       Impact factor: 1.365

Review 6.  Progress on Crowding Effect in Cell-like Structures.

Authors:  Chao Li; Xiangxiang Zhang; Mingdong Dong; Xiaojun Han
Journal:  Membranes (Basel)       Date:  2022-06-03

7.  Regulation of spatiotemporal patterning in artificial cells by a defined protein expression system.

Authors:  Aoi Yoshida; Shunshi Kohyama; Kei Fujiwara; Saki Nishikawa; Nobuhide Doi
Journal:  Chem Sci       Date:  2019-10-16       Impact factor: 9.825

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.