| Literature DB >> 31351939 |
Michael Camilleri1, Robert S Sandler2, Anne F Peery3.
Abstract
This article reviews epidemiological evidence of heritability and putative mechanisms in diverticular disease, with greatest attention to 3 recent studies of genetic associations with diverticular disease based on genome-wide or whole-genome sequencing studies in large patient cohorts. We provide an analysis of the biological plausibility of the significant associations with gene variants reported and highlight the relevance of ANO1, CPI-17 (aka PPP1R14A), COLQ6, COL6A1, CALCB or CALCA, COL6A1, ARHGAP15, and S100A10 to colonic neuromuscular function and tissue properties that may result in altered compliance and predispose to the development of diverticular disease. Such studies also identify candidate genes for future studies.Entities:
Keywords: Diverticular Hemorrhage; Diverticulitis; Diverticulum
Mesh:
Year: 2019 PMID: 31351939 PMCID: PMC6881605 DOI: 10.1016/j.jcmgh.2019.07.007
Source DB: PubMed Journal: Cell Mol Gastroenterol Hepatol ISSN: 2352-345X
Figure 1Colonic diverticula form when mucosa and submucosa herniate through the envelope that surrounds the intramural vasa recta; colonic dysmotility or structural weaknesses likely contribute to this pathology. Diverticular hemorrhage is an arterial bleed in an uninflamed diverticulum, with vascular disease or structural weakness likely playing a role. Acute diverticulitis is inflammation localized to a diverticulum and the surrounding mucosa triggered by microperforation or bacterial translocation, or focal ischemia.
Extensive Genome Studies of Association Diverticular Diseases
| Discovery Stage | Replication Stage | Combined Analysis | |||||
|---|---|---|---|---|---|---|---|
| Population | Sample Size | Genome-Wide Significant Loci | Population | Sample Size | Genome-Wide Significant Loci | Genome-Wide Significant Loci | Reference |
| Icelandic population | 5426 cases diverticular disease1 | 3 | Danish National Biobank | 5970 cases diverticular disease | 3 | 3 | |
| UK Biobank | 27,444 cases diverticular disease | 40 | Michigan Genomics Initiative | 1854 cases diverticulosis | 8 | NA | |
| UK Biobank | 31,964 cases diverticular disease | 48 | Germany, Austria, Lithuania, and Sweden | 3893 cases diverticular disease | 27 | 35 (meta-analysis using Michigan data from ref. 89) | |
Diverticular disease included individuals with diverticulosis and any potential complication. Cases of diverticular disease were defined as an individual with an International Classification of Diseases-Ninth Revision (ICD-9) code 562.1-2 or International Classification of Diseases-Tenth Revision (ICD-10) code K57.2-9. Patients who came to the hospital for diverticulitis complications or if the diagnosis was coupled to a resection of the left colon or sigmoid colon were classified as diverticulitis.
Diverticular disease included individuals with diverticulosis and any potential complication. Cases were defined as an ICD-9 code 562.1-2 or ICD-10 code K57.2-9.
Diverticular disease included individuals with diverticulosis and any potential complication. Cases were defined as an individual with any ICD-10 K57 code.
Diverticulosis cases were defined by individuals with ICD-9 562.10 or 562.12 code. Diverticulitis cases were defined by individuals with an ICD-9 562.11 or 562.13 code.
Diverticular disease included individuals with diverticulosis and any potential complication. Defined as an individual with an ICD-9 code 562 or ICD-10 K57 in the UK Biobank dataset for primary, secondary, and self-reported diverticular disease diagnosis.
Diverticular disease included individuals with diverticulosis and any potential complication. The German and Lithuanian samples were phenotyped by review of colonoscopy reports, hospital admissions, and ambulatory clinic records to identify cases with diverticulosis and diverticulitis, and diverticula-free controls. The Austrian samples were phenotyped by review of colonoscopy and clinical data. The Swedish samples were phenotyped based on colonoscopy reports to identify cases with or without diverticulosis.
Functions of Gene Variants Associated with Diverticulosis, Diverticular Disease, or Diverticulitis
| Nearest Gene | Full Name | Functions of Genes | SNP/SNV | Associations With Colon Functions | Mechanistic Effects of Variants | Discovery Reference(s) | Mechanism Reference(s) |
|---|---|---|---|---|---|---|---|
| rs875107 | DD and D-osis (89); | Intronic SNP of UNCS; | |||||
| Rho GTPase activating protein 15 | Negative regulator of neutrophil functions; affects the architecture and function of hippocampal inhibitory neurons and causes cognitive deficits | rs4662344 | DD (85,88) | Intronic SNP of UNCS; Overexpression results in an increase in actin stress fibers and cell contraction | |||
| rs6734367 | DD and D-osis (89) | Intronic SNP of UNCS | |||||
| COOH-terminal collagen Q; Methyltransferase like 6 | Collagen-like tail subunit of asymmetric acetyl-cholinesterase; controls postsynaptic differentiation at neuromuscular junction | rs7609897 | DD (88) | ||||
| protein phosphatase 1 regulatory inhibitor subunit 14A or serine peptidase inhibitor, Kunitz type 2 | rs11667256 | DD and D-osis borderline significant (89) | SNP of UNCS; however, mutations in | ||||
| purinergic receptor P2Y12 | Critical role in platelet function and microglia neuronal function | rs3732760 | DD (85) | Intronic SNP of UNCS; | |||
| calcitonin related polypeptide beta | Afferent nerve function and calcium balance, vasodilators with signaling mechanisms in vascular endothelium and smooth muscle | rs575909118 or 12293535 | D-itis > D-osis (85) | SNVs of UNCS | |||
| collagen type VI alpha 1 chain | Association with muscular dystrophies/myopathies and ossification of ligaments; Collagen VI regulates peripheral nerve myelination and function; | rs7281388 | DD (85) | Intronic SNP of UNCS; a COL6A1 mechanism associated with Hirschsprung disease by interfering with colonization of the bowel by enteric neural crest cells | |||
| Epithelial dysfunction, high expression in colon and small intestine | rs71472433 | D-itis > D-osis (85) | Intronic SNP of UNCS; | ||||
| ABO, α 1-3-N-acetylgalactosaminyl-transferase and α 1-3 galactosyl-transferase | Gene encodes proteins related to blood group system, ABO; | rs582094 | DD and D-itis (89) | Intronic SNP of UNCS | |||
| S100 calcium binding protein A10 | Regulates the remodeling of the extracellular matrix | rs61814883 | D-itis > D-osis (85) | Intronic SNP of UNCS; | |||
| bone morphogenetic protein receptor type1B | Protects neurons against kainic acid-induced neurodegeneration | rs1544387 | DD and D-itis (89); | Intronic SNP of UNCS; | |||
| Elastin gene and LIMK1 (ELASTIN) LIM domain kinase 1 | Extracellular matrix protein responsible for arterial resilience and skin integrity; Associated with aneurysms (eg, Marfan) and cutis laxa | rs3823878 | DD and D-osis (89) | Intronic SNP of UNCS; | |||
| Epidermal growth factor-containing fibulin-like extracellular matrix protein 1 | extracellular matrix protein associated inguinal hernias and varicose veins, carpal tunnel syndrome, and biliary atresia; association with risk of glioma in Chinese | rs1802575 | DD (89) | Not found in gene, genome, OMIM, or PubMed databases | |||
| solute carrier family 35 member F3 | Gene involved in hypertension and thiamine transport | rs43333882 | DD and D-osis (89) | Intronic SNV of UNCS | |||
| G protein–coupled receptor 158 | Gene involved in cognition | rs7086249 | DD and D-itis (89) | Intronic SNV of UNCS | |||
| family with sequence similarity 155 member A | Mainly expressed in hypothalamus and pituitary gland with low expression in colon | rs67153654 | DD (88) | Intronic SNP of UNCS | |||
| rs11619840 | DD and D-osis (89) | Intronic SNP of UNCS | |||||
| rs9520339 | DD (85) | Intronic SNP of UNCS | |||||
| rs3113037 | DD and D-osis (89) | Upstream variant | |||||
| cutaneous T-cell lymphoma-associated antigen 1 | Expression of | rs9960286 | DD (85) | Intergenic; SNP of UNCS | |||
| GTP binding protein 1 | Upregulated by interferon gamma and encodes a protein that is a member of the | rs138699 | DD and D-osis (89) | Intronic SNP of UNCS | |||
| ISL2 transcription factor essential for motor neuron development; | rs2056544 | DD borderline significant (85); | Intronic SNP of UNCS; | ||||
| trinucleotide repeat containing adaptor 6B | Involved in RNA interference machinery; | rs5995842 | DD (85) | Intronic SNP of UNCS; | |||
| sorting nexin 24 | Involved in endocytosis and protein trafficking; | rs34126945 | DD (85) | Intronic SNP of UNCS; | |||
| C1q and tumor necrosis factor-α-related protein 7 | Gene related to adiponectin gene and induces AMP-activated protein kinase phosphorylation, increased glycogen accumulation, and fatty acid oxidation | rs4515160 | DD (85) | Intronic SNP of UNCS; variants in | |||
| protein inhibitor of activated STAT 1 | Protein inhibitor of activated STAT proteins are multifunctional nuclear proteins operating in immune system; Associated with Huntington's and other neurodegenerative disorders | rs387505 | DD (85) | Intergenic; SNP of UNCS | |||
| H2.0 like homeobox | Involved in hematopoiesis and fetal growth; | rs2784255 | DD (85) | Intergenic; SNP of UNCS | |||
| Possible association with success at smoking cessation | rs10257317 | DD (85) | Intronic SNP of UNCS; | ||||
| long intergenic non–protein coding RNA 1082 | Associated with alveolar capillary dysplasia | rs2280028 | DD (85) (borderline) | Intergenic (downstream); SNP of UNCS | |||
| dispatched RND transporter family member 2 | Described in drosophila, zebrafish and gastric cancer | rs71472433 | DD (85) (borderline) | Intronic SNP of UNCS | |||
| calcium voltage-gated channel auxiliary subunit beta 2 | rs1888693 | DD (85) (borderline) | Intronic SNP of UNCS | ||||
| Nephroblastoma overexpressed gene | rs60869342 rs1381335 | DD (89) | rs60869342:SNV of UNCS | ||||
| ER-degradation-enhancing alpha-mannosidase-like protein-1 | rs7624168 | DD (85) | Intergenic SNV of UNCS | ||||
| lysophospholipase like 1 antisense RNA 1 | Association with hypertension, obesity and nonalcoholic fatty liver disease | rs61823192 | DD (89) | Not found in gene, genome, OMIM, or PubMed databases | |||
| solute carrier family 25 member 28 | nuclear-encoded transporters embedded in the inner mitochondrial membrane (specifically mitoferrin 2 which is ubiquitous (heart, liver, kidney | rs7098322 | DD (89) | Not found in gene, genome, OMIM, or PubMed databases | |||
| solute carrier family 4 member 1 | Associated with renal tubular acidosis and RBC senescence | rs8074740 | DD (85) | Intergenic SNV of UNCS | |||
| spliceosome associated cyclophilin | Associated with retinal degeneration, brachydactyly, craniofacial abnormalities, short stature, and neurological defects | rs10471645 | DD (85,89) | Intronic SNV of UNCS | |||
| Uncharacterized | rs4839715 | DD (Euro) (borderline) | Intronic SNP of UNCS; | ||||
| rs11619840 | DD and D-osis | Intronic SNV of UNCS | |||||
| rs72945112 | DD and D-osis | SNV of UNCS | |||||
| rs10519134 | DD and D-osis | Intronic SNV of UNCS | |||||
D-itis, diverticulitis; D-osis, diverticulosis; DD, diverticular disease; ICC, interstitial cells of Cajal; OMIM, Online Mendelian Inheritance in Man; RBC, red blood cell; SNP, single nucleotide polymorphism; SNV, single nucleotide variant; UNCS, unknown clinical significance.