Literature DB >> 31350786

A difference degree test for comparing brain networks.

Ixavier A Higgins1, Suprateek Kundu1, Ki Sueng Choi2, Helen S Mayberg2, Ying Guo1.   

Abstract

Recently, there has been a proliferation of methods investigating functional connectivity as a biomarker for mental disorders. Typical approaches include massive univariate testing at each edge or comparisons of network metrics to identify differing topological features. Limitations of these methods include low statistical power due to the large number of comparisons and difficulty attributing overall differences in networks to local variation. We propose a method to capture the difference degree, which is the number of edges incident to each region in the difference network. Our difference degree test (DDT) is a two-step procedure for identifying brain regions incident to a significant number of differentially weighted edges (DWEs). First, we select a data-adaptive threshold which identifies the DWEs followed by a statistical test for the number of DWEs incident to each brain region. We achieve this by generating an appropriate set of null networks which are matched on the first and second moments of the observed difference network using the Hirschberger-Qi-Steuer algorithm. This formulation permits separation of the network's true topology from the nuisance topology induced by the correlation measure that alters interregional connectivity in ways unrelated to brain function. In simulations, the proposed approach outperforms competing methods in detecting differentially connected regions of interest. Application of DDT to a major depressive disorder dataset leads to the identification of brain regions in the default mode network commonly implicated in this ruminative disorder.
© 2019 Wiley Periodicals, Inc.

Entities:  

Keywords:  brain connectivity; difference degree; difference network; graph theory; network test; topological measure

Mesh:

Year:  2019        PMID: 31350786      PMCID: PMC6865740          DOI: 10.1002/hbm.24718

Source DB:  PubMed          Journal:  Hum Brain Mapp        ISSN: 1065-9471            Impact factor:   5.038


  61 in total

1.  Nonparametric permutation tests for functional neuroimaging: a primer with examples.

Authors:  Thomas E Nichols; Andrew P Holmes
Journal:  Hum Brain Mapp       Date:  2002-01       Impact factor: 5.038

2.  Specificity and stability in topology of protein networks.

Authors:  Sergei Maslov; Kim Sneppen
Journal:  Science       Date:  2002-05-03       Impact factor: 47.728

3.  Detecting differential gene expression with a semiparametric hierarchical mixture method.

Authors:  Michael A Newton; Amine Noueiry; Deepayan Sarkar; Paul Ahlquist
Journal:  Biostatistics       Date:  2004-04       Impact factor: 5.899

Review 4.  Brain graphs: graphical models of the human brain connectome.

Authors:  Edward T Bullmore; Danielle S Bassett
Journal:  Annu Rev Clin Psychol       Date:  2011       Impact factor: 18.561

5.  A difference degree test for comparing brain networks.

Authors:  Ixavier A Higgins; Suprateek Kundu; Ki Sueng Choi; Helen S Mayberg; Ying Guo
Journal:  Hum Brain Mapp       Date:  2019-07-26       Impact factor: 5.038

6.  Dynamic reconfiguration of human brain networks during learning.

Authors:  Danielle S Bassett; Nicholas F Wymbs; Mason A Porter; Peter J Mucha; Jean M Carlson; Scott T Grafton
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-18       Impact factor: 11.205

7.  Functional network organization of the human brain.

Authors:  Jonathan D Power; Alexander L Cohen; Steven M Nelson; Gagan S Wig; Kelly Anne Barnes; Jessica A Church; Alecia C Vogel; Timothy O Laumann; Fran M Miezin; Bradley L Schlaggar; Steven E Petersen
Journal:  Neuron       Date:  2011-11-17       Impact factor: 17.173

Review 8.  Structural brain abnormalities in major depressive disorder: a selective review of recent MRI studies.

Authors:  Valentina Lorenzetti; Nicholas B Allen; Alex Fornito; Murat Yücel
Journal:  J Affect Disord       Date:  2009-02-23       Impact factor: 4.839

9.  A parsimonious statistical method to detect groupwise differentially expressed functional connectivity networks.

Authors:  Shuo Chen; Jian Kang; Yishi Xing; Guoqing Wang
Journal:  Hum Brain Mapp       Date:  2015-09-29       Impact factor: 5.038

10.  Three systems of insular functional connectivity identified with cluster analysis.

Authors:  Ben Deen; Naomi B Pitskel; Kevin A Pelphrey
Journal:  Cereb Cortex       Date:  2010-11-19       Impact factor: 5.357

View more
  6 in total

1.  A difference degree test for comparing brain networks.

Authors:  Ixavier A Higgins; Suprateek Kundu; Ki Sueng Choi; Helen S Mayberg; Ying Guo
Journal:  Hum Brain Mapp       Date:  2019-07-26       Impact factor: 5.038

2.  Acupuncture Regulates Symptoms of Parkinson's Disease via Brain Neural Activity and Functional Connectivity in Mice.

Authors:  Ju-Young Oh; Ye-Seul Lee; Tae-Yeon Hwang; Seong-Jin Cho; Jae-Hwan Jang; Yeonhee Ryu; Hi-Joon Park
Journal:  Front Aging Neurosci       Date:  2022-06-14       Impact factor: 5.702

3.  Bayesian Joint Modeling of Multiple Brain Functional Networks.

Authors:  Joshua Lukemire; Suprateek Kundu; Giuseppe Pagnoni; Ying Guo
Journal:  J Am Stat Assoc       Date:  2020-09-01       Impact factor: 5.033

4.  Simultaneous differential network analysis and classification for matrix-variate data with application to brain connectivity.

Authors:  Hao Chen; Ying Guo; Yong He; Jiadong Ji; Lei Liu; Yufeng Shi; Yikai Wang; Long Yu; Xinsheng Zhang
Journal:  Biostatistics       Date:  2022-07-18       Impact factor: 5.279

5.  Statistical and Machine Learning Link Selection Methods for Brain Functional Networks: Review and Comparison.

Authors:  Ilinka Ivanoska; Kire Trivodaliev; Slobodan Kalajdziski; Massimiliano Zanin
Journal:  Brain Sci       Date:  2021-05-31

6.  Functional interactions in patients with hemianopia: A graph theory-based connectivity study of resting fMRI signal.

Authors:  Caterina A Pedersini; Joan Guàrdia-Olmos; Marc Montalà-Flaquer; Nicolò Cardobi; Javier Sanchez-Lopez; Giorgia Parisi; Silvia Savazzi; Carlo A Marzi
Journal:  PLoS One       Date:  2020-01-06       Impact factor: 3.240

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.