Literature DB >> 31332379

A genome disconnect.

Elizabeth H Finn1, Tom Misteli2.   

Abstract

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Year:  2019        PMID： 31332379      PMCID： PMC7418859          DOI： 10.1038/s41588-019-0476-x

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


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  12 in total

Review 1.  Long-Range Chromatin Interactions.

Authors:  Job Dekker; Tom Misteli
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-10-01       Impact factor: 10.005

Review 2.  Studying Transcriptional Enhancers: The Founder Fallacy, Validation Creep, and Other Biases.

Authors:  Marc S Halfon
Journal:  Trends Genet       Date:  2018-12-13       Impact factor: 11.639

Review 3.  Chromatin Domains: The Unit of Chromosome Organization.

Authors:  Jesse R Dixon; David U Gorkin; Bing Ren
Journal:  Mol Cell       Date:  2016-06-02       Impact factor: 17.970

4.  Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.

Authors:  Elizabeth H Finn; Gianluca Pegoraro; Hugo B Brandão; Anne-Laure Valton; Marlies E Oomen; Job Dekker; Leonid Mirny; Tom Misteli
Journal:  Cell       Date:  2019-02-21       Impact factor: 41.582

5.  Spatial partitioning of the regulatory landscape of the X-inactivation centre.

Authors:  Elphège P Nora; Bryan R Lajoie; Edda G Schulz; Luca Giorgetti; Ikuhiro Okamoto; Nicolas Servant; Tristan Piolot; Nynke L van Berkum; Johannes Meisig; John Sedat; Joost Gribnau; Emmanuel Barillot; Nils Blüthgen; Job Dekker; Edith Heard
Journal:  Nature       Date:  2012-04-11       Impact factor: 49.962

6.  Transcription Elongation Can Affect Genome 3D Structure.

Authors:  Sven Heinz; Lorane Texari; Michael G B Hayes; Matthew Urbanowski; Max W Chang; Ninvita Givarkes; Alexander Rialdi; Kris M White; Randy A Albrecht; Lars Pache; Ivan Marazzi; Adolfo García-Sastre; Megan L Shaw; Christopher Benner
Journal:  Cell       Date:  2018-08-23       Impact factor: 41.582

7.  Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells.

Authors:  Bogdan Bintu; Leslie J Mateo; Jun-Han Su; Nicholas A Sinnott-Armstrong; Mirae Parker; Seon Kinrot; Kei Yamaya; Alistair N Boettiger; Xiaowei Zhuang
Journal:  Science       Date:  2018-10-26       Impact factor: 47.728

8.  Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions.

Authors:  Diego I Cattoni; Andrés M Cardozo Gizzi; Mariya Georgieva; Marco Di Stefano; Alessandro Valeri; Delphine Chamousset; Christophe Houbron; Stephanie Déjardin; Jean-Bernard Fiche; Inma González; Jia-Ming Chang; Thomas Sexton; Marc A Marti-Renom; Frédéric Bantignies; Giacomo Cavalli; Marcelo Nollmann
Journal:  Nat Commun       Date:  2017-11-24       Impact factor: 14.919

9.  Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression.

Authors:  Yad Ghavi-Helm; Aleksander Jankowski; Sascha Meiers; Rebecca R Viales; Jan O Korbel; Eileen E M Furlong
Journal:  Nat Genet       Date:  2019-07-15       Impact factor: 38.330

10.  Dynamic interplay between enhancer-promoter topology and gene activity.

Authors:  Hongtao Chen; Michal Levo; Lev Barinov; Miki Fujioka; James B Jaynes; Thomas Gregor
Journal:  Nat Genet       Date:  2018-07-23       Impact factor: 38.330
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  6 in total

Review 1.  The spatial organization of transcriptional control.

Authors:  Antonina Hafner; Alistair Boettiger
Journal:  Nat Rev Genet       Date:  2022-09-14       Impact factor: 59.581

Review 2.  Three-dimensional genome organization in immune cell fate and function.

Authors:  Sergi Cuartero; Grégoire Stik; Ralph Stadhouders
Journal:  Nat Rev Immunol       Date:  2022-09-20       Impact factor: 108.555

3.  Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing.

Authors:  Aditya S Deshpande; Netha Ulahannan; Matthew Pendleton; Xiaoguang Dai; Lynn Ly; Julie M Behr; Stefan Schwenk; Will Liao; Michael A Augello; Carly Tyer; Priyesh Rughani; Sarah Kudman; Huasong Tian; Hannah G Otis; Emily Adney; David Wilkes; Juan Miguel Mosquera; Christopher E Barbieri; Ari Melnick; David Stoddart; Daniel J Turner; Sissel Juul; Eoghan Harrington; Marcin Imieliński
Journal:  Nat Biotechnol       Date:  2022-05-30       Impact factor: 68.164

4.  Inversion of a topological domain leads to restricted changes in its gene expression and affects interdomain communication.

Authors:  Rafael Galupa; Christel Picard; Nicolas Servant; Elphège P Nora; Yinxiu Zhan; Joke G van Bemmel; Fatima El Marjou; Colin Johanneau; Maud Borensztein; Katia Ancelin; Luca Giorgetti; Edith Heard
Journal:  Development       Date:  2022-05-06       Impact factor: 6.862

5.  TGFβ promotes widespread enhancer chromatin opening and operates on genomic regulatory domains.

Authors:  Jose A Guerrero-Martínez; María Ceballos-Chávez; Florian Koehler; Sandra Peiró; Jose C Reyes
Journal:  Nat Commun       Date:  2020-12-03       Impact factor: 14.919

Review 6.  Resolution of Complex Issues in Genome Regulation and Cancer Requires Non-Linear and Network-Based Thermodynamics.

Authors:  Jekaterina Erenpreisa; Alessandro Giuliani
Journal:  Int J Mol Sci       Date:  2019-12-29       Impact factor: 5.923
  6 in total

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