| Literature DB >> 31311886 |
Anna Nenarokova1,2, Kristína Záhonová1,3, Marija Krasilnikova4, Ondřej Gahura1, Richard McCulloch4, Alena Zíková1,2, Vyacheslav Yurchenko5,6, Julius Lukeš7,2.
Abstract
We report frequent losses of components of the classical nonhomologous end joining pathway (C-NHEJ), one of the main eukaryotic tools for end joining repair of DNA double-strand breaks, in several lineages of parasitic protists. Moreover, we have identified a single lineage among trypanosomatid flagellates that has lost Ku70 and Ku80, the core C-NHEJ components, and accumulated numerous insertions in many protein-coding genes. We propose a correlation between these two phenomena and discuss the possible impact of the C-NHEJ loss on genome evolution and transition to the parasitic lifestyle.IMPORTANCE Parasites tend to evolve small and compact genomes, generally endowed with a high mutation rate, compared with those of their free-living relatives. However, the mechanisms by which they achieve these features, independently in unrelated lineages, remain largely unknown. We argue that the loss of the classical nonhomologous end joining pathway components may be one of the crucial steps responsible for characteristic features of parasite genomes.Entities:
Keywords: DNA repair; genome size; parasite
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Year: 2019 PMID: 31311886 PMCID: PMC6635534 DOI: 10.1128/mBio.01541-19
Source DB: PubMed Journal: mBio Impact factor: 7.867
FIG 1Distribution of main C-NHEJ components across eukaryotes. Median genome size is represented as black circles of corresponding size.
FIG 2Multiple insertions are present in “jaculum” proteins. The N-terminal part of the poly(A)-binding protein alignment of chosen trypanosomatids is shown (full-length alignment is available in Fig. S1). Insertions present in “jaculum” proteins are highlighted by yellow background. Peptides identified by mass spectrometry are underlined in black. Two dots represent regions of the sequence alignment that are conserved among the species and were omitted for simplicity.
FIG 3Mapping of insertions in the “jaculum” proteins onto structures of dihydrofolate reductase in complex with pyrimethamine (118) (A), leucyl aminopeptidase (119) (B), the phosphatase domain of phosphoglycerate mutase (120) (C), and adenosine kinase in complex with adenosine and AMPPNP (121) (D) from T. brucei. The positions and lengths of insertions in the “jaculum” proteins are shown in red.