Literature DB >> 17218520

Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis.

Jane M Carlton1, Robert P Hirt, Joana C Silva, Arthur L Delcher, Michael Schatz, Qi Zhao, Jennifer R Wortman, Shelby L Bidwell, U Cecilia M Alsmark, Sébastien Besteiro, Thomas Sicheritz-Ponten, Christophe J Noel, Joel B Dacks, Peter G Foster, Cedric Simillion, Yves Van de Peer, Diego Miranda-Saavedra, Geoffrey J Barton, Gareth D Westrop, Sylke Müller, Daniele Dessi, Pier Luigi Fiori, Qinghu Ren, Ian Paulsen, Hanbang Zhang, Felix D Bastida-Corcuera, Augusto Simoes-Barbosa, Mark T Brown, Richard D Hayes, Mandira Mukherjee, Cheryl Y Okumura, Rachel Schneider, Alias J Smith, Stepanka Vanacova, Maria Villalvazo, Brian J Haas, Mihaela Pertea, Tamara V Feldblyum, Terry R Utterback, Chung-Li Shu, Kazutoyo Osoegawa, Pieter J de Jong, Ivan Hrdy, Lenka Horvathova, Zuzana Zubacova, Pavel Dolezal, Shehre-Banoo Malik, John M Logsdon, Katrin Henze, Arti Gupta, Ching C Wang, Rebecca L Dunne, Jacqueline A Upcroft, Peter Upcroft, Owen White, Steven L Salzberg, Petrus Tang, Cheng-Hsun Chiu, Ying-Shiung Lee, T Martin Embley, Graham H Coombs, Jeremy C Mottram, Jan Tachezy, Claire M Fraser-Liggett, Patricia J Johnson.   

Abstract

We describe the genome sequence of the protist Trichomonas vaginalis, a sexually transmitted human pathogen. Repeats and transposable elements comprise about two-thirds of the approximately 160-megabase genome, reflecting a recent massive expansion of genetic material. This expansion, in conjunction with the shaping of metabolic pathways that likely transpired through lateral gene transfer from bacteria, and amplification of specific gene families implicated in pathogenesis and phagocytosis of host proteins may exemplify adaptations of the parasite during its transition to a urogenital environment. The genome sequence predicts previously unknown functions for the hydrogenosome, which support a common evolutionary origin of this unusual organelle with mitochondria.

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Year:  2007        PMID: 17218520      PMCID: PMC2080659          DOI: 10.1126/science.1132894

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  36 in total

Review 1.  Coincidence, coevolution, or causation? DNA content, cell size, and the C-value enigma.

Authors:  T R Gregory
Journal:  Biol Rev Camb Philos Soc       Date:  2001-02

2.  The new higher level classification of eukaryotes with emphasis on the taxonomy of protists.

Authors:  Sina M Adl; Alastair G B Simpson; Mark A Farmer; Robert A Andersen; O Roger Anderson; John R Barta; Samuel S Bowser; Guy Brugerolle; Robert A Fensome; Suzanne Fredericq; Timothy Y James; Sergei Karpov; Paul Kugrens; John Krug; Christopher E Lane; Louise A Lewis; Jean Lodge; Denis H Lynn; David G Mann; Richard M McCourt; Leonel Mendoza; Ojvind Moestrup; Sharon E Mozley-Standridge; Thomas A Nerad; Carol A Shearer; Alexey V Smirnov; Frederick W Spiegel; Max F J R Taylor
Journal:  J Eukaryot Microbiol       Date:  2005 Sep-Oct       Impact factor: 3.346

3.  Myosin domain evolution and the primary divergence of eukaryotes.

Authors:  Thomas A Richards; Thomas Cavalier-Smith
Journal:  Nature       Date:  2005-08-25       Impact factor: 49.962

4.  Identification of a family of BspA like surface proteins of Entamoeba histolytica with novel leucine rich repeats.

Authors:  Paul H Davis; Zhi Zhang; Minghe Chen; Xiaochun Zhang; Subhra Chakraborty; Samuel L Stanley
Journal:  Mol Biochem Parasitol       Date:  2005-09-16       Impact factor: 1.759

Review 5.  Eukaryotic evolution, changes and challenges.

Authors:  T Martin Embley; William Martin
Journal:  Nature       Date:  2006-03-30       Impact factor: 49.962

6.  Trichomonas vaginalis lipophosphoglycan mutants have reduced adherence and cytotoxicity to human ectocervical cells.

Authors:  Felix D Bastida-Corcuera; Cheryl Y Okumura; Angie Colocoussi; Patricia J Johnson
Journal:  Eukaryot Cell       Date:  2005-11

7.  Spliceosomal introns in the deep-branching eukaryote Trichomonas vaginalis.

Authors:  Stepánka Vanácová; Weihong Yan; Jane M Carlton; Patricia J Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-11       Impact factor: 11.205

8.  Cysteine biosynthesis in Trichomonas vaginalis involves cysteine synthase utilizing O-phosphoserine.

Authors:  Gareth D Westrop; Gordon Goodall; Jeremy C Mottram; Graham H Coombs
Journal:  J Biol Chem       Date:  2006-05-30       Impact factor: 5.157

9.  Comparative analysis of the kinomes of three pathogenic trypanosomatids: Leishmania major, Trypanosoma brucei and Trypanosoma cruzi.

Authors:  Marilyn Parsons; Elizabeth A Worthey; Pauline N Ward; Jeremy C Mottram
Journal:  BMC Genomics       Date:  2005-09-15       Impact factor: 3.969

10.  Protein family expansions and biological complexity.

Authors:  Christine Vogel; Cyrus Chothia
Journal:  PLoS Comput Biol       Date:  2006-05-26       Impact factor: 4.475

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  328 in total

1.  A machine learning approach to identify hydrogenosomal proteins in Trichomonas vaginalis.

Authors:  David Burstein; Sven B Gould; Verena Zimorski; Thorsten Kloesges; Fuat Kiosse; Peter Major; William F Martin; Tal Pupko; Tal Dagan
Journal:  Eukaryot Cell       Date:  2011-12-02

2.  The Trichomonas vaginalis hydrogenosome proteome is highly reduced relative to mitochondria, yet complex compared with mitosomes.

Authors:  Rachel E Schneider; Mark T Brown; April M Shiflett; Sabrina D Dyall; Richard D Hayes; Yongming Xie; Joseph A Loo; Patricia J Johnson
Journal:  Int J Parasitol       Date:  2011-11-09       Impact factor: 3.981

3.  Histone H3 Variants in Trichomonas vaginalis.

Authors:  Zuzana Zubácová; Jitka Hostomská; Jan Tachezy
Journal:  Eukaryot Cell       Date:  2012-03-09

4.  A highly organized structure mediating nuclear localization of a Myb2 transcription factor in the protozoan parasite Trichomonas vaginalis.

Authors:  Chien-Hsin Chu; Lung-Chun Chang; Hong-Ming Hsu; Shu-Yi Wei; Hsing-Wei Liu; Yu Lee; Chung-Chi Kuo; Dharmu Indra; Chinpan Chen; Shiou-Jeng Ong; Jung-Hsiang Tai
Journal:  Eukaryot Cell       Date:  2011-10-21

5.  Sculpting the endomembrane system in deep time: high resolution phylogenetics of Rab GTPases.

Authors:  Marek Elias; Andrew Brighouse; Carme Gabernet-Castello; Mark C Field; Joel B Dacks
Journal:  J Cell Sci       Date:  2012-02-24       Impact factor: 5.285

Review 6.  Biochemistry and evolution of anaerobic energy metabolism in eukaryotes.

Authors:  Miklós Müller; Marek Mentel; Jaap J van Hellemond; Katrin Henze; Christian Woehle; Sven B Gould; Re-Young Yu; Mark van der Giezen; Aloysius G M Tielens; William F Martin
Journal:  Microbiol Mol Biol Rev       Date:  2012-06       Impact factor: 11.056

Review 7.  MicroRNAs of parasites: current status and future perspectives.

Authors:  Quan Liu; Wenbin Tuo; Hongwei Gao; Xing-Quan Zhu
Journal:  Parasitol Res       Date:  2010-06-08       Impact factor: 2.289

8.  Hydrogen production by termite gut protists: characterization of iron hydrogenases of Parabasalian symbionts of the termite Coptotermes formosanus.

Authors:  Jun-Ichi Inoue; Kanako Saita; Toshiaki Kudo; Sadaharu Ui; Moriya Ohkuma
Journal:  Eukaryot Cell       Date:  2007-08-31

9.  Frataxin, a conserved mitochondrial protein, in the hydrogenosome of Trichomonas vaginalis.

Authors:  Pavel Dolezal; Andrew Dancis; Emmanuel Lesuisse; Róbert Sutak; Ivan Hrdý; T Martin Embley; Jan Tachezy
Journal:  Eukaryot Cell       Date:  2007-06-15

Review 10.  Trichomonas vaginalis vaginitis in obstetrics and gynecology practice: new concepts and controversies.

Authors:  Jenell S Coleman; Charlotte A Gaydos; Frank Witter
Journal:  Obstet Gynecol Surv       Date:  2013-01       Impact factor: 2.347

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