Literature DB >> 31311710

Protein NMR: Boundless opportunities.

Ad Bax1, G Marius Clore2.   

Abstract

Over the past approximately three decades, isotope-directed NMR spectroscopy has become a powerful method for determining 3D structures of biological macromolecules and their complexes in solution. From a structural perspective NMR provides an invaluable tool for studying systems that are not amenable to crystallization, including intrinsically disordered proteins and weak complexes. In contrast to both X-ray crystallography and cryo-electron microscopy which afford a largely static view of the systems under consideration, the great power of NMR lies in its ability to quantitatively probe exchange dynamics between interconverting states, and to reveal and characterize at atomic resolution the existence of transient states that may be populated at levels as low as 1%. Such "excited" states play a key role in macromolecular recognition, allostery, signal transduction and macromolecular assembly, including the initial events involved in aggregation and amyloid formation. Optimal application of NMR to such systems of fundamental biological interest requires a sound footing of the physical underpinnings of today's and tomorrow's sophisticated NMR experiments. Published by Elsevier Inc.

Entities:  

Keywords:  Conformational exchange; Dynamics; Heteronuclear NMR; Megadalton assemblies; Sparsely-populated excited states; Structure; Supramolecular machines

Mesh:

Substances:

Year:  2019        PMID: 31311710      PMCID: PMC6703950          DOI: 10.1016/j.jmr.2019.07.037

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  53 in total

1.  Model-free approach to the dynamic interpretation of residual dipolar couplings in globular proteins.

Authors:  J Meiler; J J Prompers; W Peti; C Griesinger; R Brüschweiler
Journal:  J Am Chem Soc       Date:  2001-06-27       Impact factor: 15.419

Review 2.  Nuclear magnetic resonance spectroscopy of high-molecular-weight proteins.

Authors:  Vitali Tugarinov; Peter M Hwang; Lewis E Kay
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

Review 3.  Residual dipolar couplings in structure determination of biomolecules.

Authors:  J H Prestegard; C M Bougault; A I Kishore
Journal:  Chem Rev       Date:  2004-08       Impact factor: 60.622

4.  NMR characterization of the dynamics of biomacromolecules.

Authors:  Arthur G Palmer
Journal:  Chem Rev       Date:  2004-08       Impact factor: 60.622

5.  Experimentally exploring the conformational space sampled by domain reorientation in calmodulin.

Authors:  Ivano Bertini; Cristina Del Bianco; Ioannis Gelis; Nikolaus Katsaros; Claudio Luchinat; Giacomo Parigi; Massimiliano Peana; Alessandro Provenzani; Maria Antonietta Zoroddu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-20       Impact factor: 11.205

6.  Solution NMR-derived global fold of a monomeric 82-kDa enzyme.

Authors:  Vitali Tugarinov; Wing-Yiu Choy; Vladislav Yu Orekhov; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-06       Impact factor: 11.205

7.  Dynamics of unbinding of cell adhesion molecules: transition from catch to slip bonds.

Authors:  V Barsegov; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-08       Impact factor: 11.205

8.  Druggability indices for protein targets derived from NMR-based screening data.

Authors:  Philip J Hajduk; Jeffrey R Huth; Stephen W Fesik
Journal:  J Med Chem       Date:  2005-04-07       Impact factor: 7.446

Review 9.  Intrinsically unstructured proteins and their functions.

Authors:  H Jane Dyson; Peter E Wright
Journal:  Nat Rev Mol Cell Biol       Date:  2005-03       Impact factor: 94.444

10.  Cross-correlated relaxation enhanced 1H[bond]13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes.

Authors:  Vitali Tugarinov; Peter M Hwang; Jason E Ollerenshaw; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2003-08-27       Impact factor: 15.419

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  7 in total

1.  Visualizing an Allosteric Intermediate Using CuAAC Stabilization of an NMR Mixed Labeled Dimer.

Authors:  Paul J Sapienza; Michelle M Currie; Noah M Lancaster; Kelin Li; Jeffrey Aubé; Dennis Goldfarb; Erica W Cloer; Michael B Major; Andrew L Lee
Journal:  ACS Chem Biol       Date:  2021-11-16       Impact factor: 4.634

2.  Ligand-induced structural transitions combined with paramagnetic ions facilitate unambiguous NMR assignments of methyl groups in large proteins.

Authors:  Lars Mühlberg; Tuncay Alarcin; Thorben Maass; Robert Creutznacher; Richard Küchler; Alvaro Mallagaray
Journal:  J Biomol NMR       Date:  2022-04-10       Impact factor: 2.582

Review 3.  High Resolution 31P Field Cycling NMR Reveals Unsuspected Features of Enzyme-Substrate-Cofactor Dynamics.

Authors:  Mary F Roberts; Lizbeth Hedstrom
Journal:  Front Mol Biosci       Date:  2022-03-31

4.  Machine learning/molecular dynamic protein structure prediction approach to investigate the protein conformational ensemble.

Authors:  Martina Audagnotto; Werngard Czechtizky; Leonardo De Maria; Helena Käck; Garegin Papoian; Lars Tornberg; Christian Tyrchan; Johan Ulander
Journal:  Sci Rep       Date:  2022-06-15       Impact factor: 4.996

Review 5.  17O NMR Spectroscopy: A Novel Probe for Characterizing Protein Structure and Folding.

Authors:  Srinivasan Muniyappan; Yuxi Lin; Young-Ho Lee; Jin Hae Kim
Journal:  Biology (Basel)       Date:  2021-05-21

6.  Nearest-neighbor NMR spectroscopy: categorizing spectral peaks by their adjacent nuclei.

Authors:  Soumya P Behera; Abhinav Dubey; Wan-Na Chen; Viviane S De Paula; Meng Zhang; Nikolaos G Sgourakis; Wolfgang Bermel; Gerhard Wagner; Paul W Coote; Haribabu Arthanari
Journal:  Nat Commun       Date:  2020-11-03       Impact factor: 14.919

Review 7.  Computational methods for exploring protein conformations.

Authors:  Jane R Allison
Journal:  Biochem Soc Trans       Date:  2020-08-28       Impact factor: 5.407

  7 in total

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