Literature DB >> 31309207

Exploring the strength of a hydrogen bond as a function of steric environment using 1,2-azaborine ligands and engineered T4 lysozyme receptors.

Yao Liu1, Shih-Yuan Liu1.   

Abstract

A congeneric series of 1,2-azaborine ligands was used to study the relationship between the steric demand of the ligand and hydrogen bonding strength in the context of ligand-protein binding using engineered T4 lysozymes as the model biomacromolecules. The hydrogen bonding strength values were extracted from experimentally accessible binding free energies using the Double Mutant Cycle analysis. With the increasing steric demand, the NH…102Q hydrogen bonding interaction is weakened; however, this weakening of the hydrogen bonding interaction occurs in discrete steps rather than in an incremental fashion.

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 31309207      PMCID: PMC6656596          DOI: 10.1039/c9ob01008d

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  28 in total

1.  Exact analysis of competition ligand binding by displacement isothermal titration calorimetry.

Authors:  B W Sigurskjold
Journal:  Anal Biochem       Date:  2000-01-15       Impact factor: 3.365

Review 2.  Chemical double-mutant cycles: dissecting non-covalent interactions.

Authors:  Scott L Cockroft; Christopher A Hunter
Journal:  Chem Soc Rev       Date:  2006-11-27       Impact factor: 54.564

3.  A hybrid organic/inorganic benzene.

Authors:  Adam J V Marwitz; Myrna H Matus; Lev N Zakharov; David A Dixon; Shih-Yuan Liu
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

4.  Homologous ligands accommodated by discrete conformations of a buried cavity.

Authors:  Matthew Merski; Marcus Fischer; Trent E Balius; Oliv Eidam; Brian K Shoichet
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-06       Impact factor: 11.205

5.  Medicinal Chemistry Profiling of Monocyclic 1,2-Azaborines.

Authors:  Peng Zhao; David O Nettleton; Rajeshri G Karki; Frédéric J Zécri; Shih-Yuan Liu
Journal:  ChemMedChem       Date:  2017-02-21       Impact factor: 3.466

6.  Hydrogen Bonding of 1,2-Azaborines in the Binding Cavity of T4 Lysozyme Mutants: Structures and Thermodynamics.

Authors:  Hyelee Lee; Marcus Fischer; Brian K Shoichet; Shih-Yuan Liu
Journal:  J Am Chem Soc       Date:  2016-09-12       Impact factor: 15.419

7.  Energetic origins of specificity of ligand binding in an interior nonpolar cavity of T4 lysozyme.

Authors:  A Morton; W A Baase; B W Matthews
Journal:  Biochemistry       Date:  1995-07-11       Impact factor: 3.162

8.  Theoretical Calculation of Hydrogen-Bonding Strength for Drug Molecules.

Authors:  Ming-Hong Hao
Journal:  J Chem Theory Comput       Date:  2006-05       Impact factor: 6.006

9.  BN/CC isosterism in borazaronaphthalenes towards phosphodiesterase 10A (PDE10A) inhibitors.

Authors:  Alexandru Vlasceanu; Mikkel Jessing; John Paul Kilburn
Journal:  Bioorg Med Chem       Date:  2015-06-15       Impact factor: 3.641

10.  A Boron Protecting Group Strategy for 1,2-Azaborines.

Authors:  Andrew W Baggett; Shih-Yuan Liu
Journal:  J Am Chem Soc       Date:  2017-10-11       Impact factor: 15.419

View more
  4 in total

1.  Accessing 1,2-Substituted Cyclobutanes through 1,2-Azaborine Photoisomerization.

Authors:  Zachary X Giustra; Xinyu Yang; Min Chen; Holger F Bettinger; Shih-Yuan Liu
Journal:  Angew Chem Int Ed Engl       Date:  2019-11-07       Impact factor: 15.336

2.  Cation-π binding ability of BN indole.

Authors:  Katherine Boknevitz; Clovis Darrigan; Anna Chrostowska; Shih-Yuan Liu
Journal:  Chem Commun (Camb)       Date:  2020-03-31       Impact factor: 6.222

3.  Structure-affinity relationships of reversible proline analog inhibitors targeting proline dehydrogenase.

Authors:  Alexandra N Bogner; John J Tanner
Journal:  Org Biomol Chem       Date:  2022-01-26       Impact factor: 3.876

4.  Selectivity in the Elaboration of Bicyclic Borazarenes.

Authors:  Ayan Bhattacharjee; Geraint H M Davies; Borna Saeednia; Steven R Wisniewski; Gary A Molander
Journal:  Adv Synth Catal       Date:  2020-12-23       Impact factor: 5.837

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.