Literature DB >> 27603116

Hydrogen Bonding of 1,2-Azaborines in the Binding Cavity of T4 Lysozyme Mutants: Structures and Thermodynamics.

Hyelee Lee1, Marcus Fischer2, Brian K Shoichet2, Shih-Yuan Liu1.   

Abstract

Protein crystallography and calorimetry were used to characterize the binding of 1,2-azaborines to model cavities in T4 lysozyme in direct comparison to their carbonaceous counterparts. In the apolar L99A cavity, affinity for Ab dropped only slightly versus benzene. In the cavity designed to accommodate a single hydrogen bond (L99A/M102Q), Gln102═O···H-N hydrogen bonding for Ab and BEtAb was observed in the crystallographic complexes. The strength of the hydrogen bonding was estimated as 0.94 and 0.64 kcal/mol for Ab and BEtAb, respectively. This work unambiguously demonstrates that 1,2-azaborines can be readily accommodated in classic aryl recognition pockets and establishes one of 1,2-azaborine's distinguishing features from its carbonaceous isostere benzene: its ability to serve as an NH hydrogen bond donor in a biological setting.

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Year:  2016        PMID: 27603116      PMCID: PMC5087281          DOI: 10.1021/jacs.6b06566

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  42 in total

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2.  Rescoring docking hit lists for model cavity sites: predictions and experimental testing.

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Review 3.  The role and significance of unconventional hydrogen bonds in small molecule recognition by biological receptors of pharmaceutical relevance.

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4.  Novel inhibitors of the MDM2-p53 interaction featuring hydrogen bond acceptors as carboxylic acid isosteres.

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Journal:  J Med Chem       Date:  2014-03-27       Impact factor: 7.446

5.  Specificity of ligand binding in a buried nonpolar cavity of T4 lysozyme: linkage of dynamics and structural plasticity.

Authors:  A Morton; B W Matthews
Journal:  Biochemistry       Date:  1995-07-11       Impact factor: 3.162

6.  Energetic origins of specificity of ligand binding in an interior nonpolar cavity of T4 lysozyme.

Authors:  A Morton; W A Baase; B W Matthews
Journal:  Biochemistry       Date:  1995-07-11       Impact factor: 3.162

7.  The higher barrier of darunavir and tipranavir resistance for HIV-1 protease.

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8.  BN/CC isosterism in borazaronaphthalenes towards phosphodiesterase 10A (PDE10A) inhibitors.

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Journal:  Bioorg Med Chem       Date:  2015-06-15       Impact factor: 3.641

9.  BN/CC isosteric compounds as enzyme inhibitors: N- and B-ethyl-1,2-azaborine inhibit ethylbenzene hydroxylation as nonconvertible substrate analogues.

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Journal:  Angew Chem Int Ed Engl       Date:  2013-01-28       Impact factor: 15.336

10.  Elemental isomerism: a boron-nitrogen surrogate for a carbon-carbon double bond increases the chemical diversity of estrogen receptor ligands.

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Journal:  Chem Biol       Date:  2007-06
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  17 in total

Review 1.  The State of the Art in Azaborine Chemistry: New Synthetic Methods and Applications.

Authors:  Zachary X Giustra; Shih-Yuan Liu
Journal:  J Am Chem Soc       Date:  2018-01-17       Impact factor: 15.419

2.  Synthesis of 1,2-Azaborines and the Preparation of Their Protein Complexes with T4 Lysozyme Mutants.

Authors:  Hyelee Lee; Shih-Yuan Liu
Journal:  J Vis Exp       Date:  2017-03-25       Impact factor: 1.355

3.  Medicinal Chemistry Profiling of Monocyclic 1,2-Azaborines.

Authors:  Peng Zhao; David O Nettleton; Rajeshri G Karki; Frédéric J Zécri; Shih-Yuan Liu
Journal:  ChemMedChem       Date:  2017-02-21       Impact factor: 3.466

Review 4.  The versatility of boron in biological target engagement.

Authors:  Diego B Diaz; Andrei K Yudin
Journal:  Nat Chem       Date:  2017-07-25       Impact factor: 24.427

5.  Accessing 1,2-Substituted Cyclobutanes through 1,2-Azaborine Photoisomerization.

Authors:  Zachary X Giustra; Xinyu Yang; Min Chen; Holger F Bettinger; Shih-Yuan Liu
Journal:  Angew Chem Int Ed Engl       Date:  2019-11-07       Impact factor: 15.336

6.  Cation-π binding ability of BN indole.

Authors:  Katherine Boknevitz; Clovis Darrigan; Anna Chrostowska; Shih-Yuan Liu
Journal:  Chem Commun (Camb)       Date:  2020-03-31       Impact factor: 6.222

7.  1,2-Azaborine's Distinct Electronic Structure Unlocks Two New Regioisomeric Building Blocks via Resolution Chemistry.

Authors:  Cameron R McConnell; Fredrik Haeffner; Andrew W Baggett; Shih-Yuan Liu
Journal:  J Am Chem Soc       Date:  2019-05-23       Impact factor: 15.419

8.  Exploring the strength of a hydrogen bond as a function of steric environment using 1,2-azaborine ligands and engineered T4 lysozyme receptors.

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Journal:  Org Biomol Chem       Date:  2019-07-16       Impact factor: 3.876

9.  The Dewar Isomer of 1,2-Dihydro-1,2-azaborinines: Isolation, Fragmentation, and Energy Storage.

Authors:  Klara Edel; Xinyu Yang; Jacob S A Ishibashi; Ashley N Lamm; Cäcilia Maichle-Mössmer; Zachary X Giustra; Shih-Yuan Liu; Holger F Bettinger
Journal:  Angew Chem Int Ed Engl       Date:  2018-03-30       Impact factor: 15.336

10.  Selectivity in the Elaboration of Bicyclic Borazarenes.

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Journal:  Adv Synth Catal       Date:  2020-12-23       Impact factor: 5.837

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