| Literature DB >> 31301090 |
Yan Deng1, Zhi-Jian Chen1, Fang Lan2, Qi-Tian He3, Si-Yuan Chen1, Yu-Fang Du1, Shan Li1, Xue Qin1.
Abstract
BACKGROUND: This study aimed to determine whether CD44 polymorphisms were correlated with hepatocellular carcinoma (HCC) and to reveal a new potential target for early prediction, prevention, and diagnosis of HCC.Entities:
Keywords: CD44; hepatocellular carcinoma; polymorphism
Mesh:
Substances:
Year: 2019 PMID: 31301090 PMCID: PMC6805271 DOI: 10.1002/jcla.22977
Source DB: PubMed Journal: J Clin Lab Anal ISSN: 0887-8013 Impact factor: 2.352
Primer sequence and the reaction condition for genotyping CD44 polymorphisms
| Polymorphism | Primer sequence | Annealing temperature (°C) | Restriction enzyme | Product size (bp) |
|---|---|---|---|---|
| rs8193 | F: 5′‐ CCCCACCAGCTAAGGACATT ‐3' | 64 | BseMI | CC: 97 + 391 TT: 488 |
| R: 5′‐ AGTGGGAACTCAGGGTCTCT ‐3′ | CT: 97 + 391 + 488 | |||
| rs10836347 and rs13347 | F: 5′‐ AGAGATTTCCTGGGTCTGCC ‐3′ | 60 | ||
| R: 5′‐ GACTTAGCCCAGGTCACCT ‐3′ |
Characteristics of study subjects
| Groups | Healthy controls (HC)(n = 210) | Chronic HBV patients (n = 96) |
| HBV‐related LC (n = 96) |
| HBV‐related HCC patients (n = 204) |
|
|---|---|---|---|---|---|---|---|
| Age (y) (Mean ± SD) | 46.6 ± 6.9 | 37.8 ± 12.4 | <.001 | 49.9 ± 11.1 | <.001 | 49.2 ± 11.1 | <.001 |
| Gender, n(%) | |||||||
| Male | 153 (72.9) | 77 (80.3) | .167 | 75 (78.1) | .327 | 165 (80.8) | .053 |
| Female | 57 (27.1) | 19 (19.7) | 21 (21.9) | 39 (19.2) | |||
| Smoking status, n(%) | |||||||
| Yes | 64 (30.5) | 38 (39.5) | .117 | 45 (46.8) | .005 | 73 (35.8) | .251 |
| No | 146 (69.5) | 58 (60.5) | 51 (53.2) | 131 (64.2) | |||
| Drinking, n(%) | |||||||
| Yes | 56 (26.7) | 37 (38.5) | .036 | 35 (36.4) | .082 | 79 (38.7) | .009 |
| No | 154 (73.3) | 59 (61.5) | 61 (63.6) | 125 (61.3) | |||
Genotype distributions and allele frequencies of CD44 polymorphisms between disease groups and controls
| Polymorphisms |
HC |
CHB |
LC |
HCC | CHB vs HC | LC vs HC | HCC vs HC | |||
|---|---|---|---|---|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| |||||
| rs8193 | ||||||||||
| Genotypes | ||||||||||
| CC | 66 (31.4) | 37 (38.5) | 36 (37.5) | 61 (29.9) | 1.00ref | 1.00ref | 1.00ref | |||
| CT | 103 (49.1) | 44 (45.8) | 46 (47.9) | 112 (54.9) | 0.649 (0.351‐1.199) | .167 | 0.906 (0.520‐1.578) | .728 | 1.173 (0.748‐1.838) | .488 |
| TT | 41 (19.5) | 15 (15.7) | 14 (14.6) | 31 (15.2) | 0.740 (0.328‐1.670) | .469 | 0.685 (0.322‐1.458) | .327 | 0.809 (0.446‐1.467) | .485 |
| Allele | ||||||||||
| C | 235 (55.9) | 118(61.4) | 118(61.4) | 234 (57.4) | 1.00ref | 1.00ref | 1.00ref | |||
| T | 185 (44.1) | 74 (38.6) | 74 (38.6) | 174 (42.6) | 0.821 (0.553‐1.219) | .328 | 0.843 (0.588‐1.207) | .350 | 0.940 (0.710‐1.246) | .667 |
| Dominant model | ||||||||||
| CC | 66 (31.4) | 37 (38.5) | 36 (37.5) | 61 (29.9) | 1.00ref | 1.00ref | 1.00ref | |||
| CT + TT | 144 (68.6) | 59 (61.5) | 60 (62.5) | 143 (70.1) | 0.672 (0.377‐1.197) | .177 | 0.843 (0.499‐1.424) | .523 | 1.068 (0.696‐1.637) | .763 |
| Recessive model | ||||||||||
| CC + CT | 169 (80.5) | 81 (84.3) | 82 (85.4) | 173 (84.8) | 1.00ref | 1.00ref | 1.00ref | |||
| TT | 41 (19.5) | 15 (15.7) | 14 (14.6) | 31 (15.2) | 0.955 (0.459‐1.986) | .901 | 0.726 (0.366‐1.438) | .358 | 0.733 (0.433‐1.239) | .246 |
| rs10836347 | ||||||||||
| Genotypes | ||||||||||
| CC | 98 (46.7) | 40 (41.7) | 36 (37.5) | 73 (35.8) | 1.00ref | 1.00ref | 1.00ref | |||
| CT | 90 (42.9) | 48 (50) | 40 (41.7) | 99 (48.5) | 0.304 (0.089‐1.039) | .057 | 1.306 (0.619‐2.757) | .484 | 1.406 (0.784‐2.251) | .253 |
| TT | 22 (10.4) | 8 (8.3) | 20 (20.8) | 32 (15.7) | NA | NA | NA | |||
| Allele | ||||||||||
| C | 286 (68.1) | 128(66.7) | 112(58.3) | 245 (60.0) | 1.00ref | 1.00ref | 1.00ref | |||
| T | 134 (31.9) | 64 (33.3) | 80 (41.7) | 163 (40.0) | 0.318 (0.095‐1.065) | .063 | 1.282 (0.624‐2.632) | .499 | 1.372 (0.782‐2.409) | .271 |
| rs13347 | ||||||||||
| Genotypes | ||||||||||
| CC | 98 (46.7) | 40 (41.7) | 36 (37.5) | 73 (35.8) | 1.00ref | 1.00ref | 1.00ref | |||
| CT | 90 (42.9) | 48 (50) | 40 (41.7) | 99 (48.5) | 1.225 (0.688‐2.183) | .490 | 1.282 (0.737‐2.230) | .379 | 1.626 (1.057‐2.500) | .027 |
| TT | 22 (10.4) | 8 (8.3) | 20 (20.8) | 32 (15.7) | 1.033 (0.382‐2.795) | .948 | 2.601 (1.242‐5.447) | .011 | 1.965 (1.043‐3.702) | .037 |
| Allele | ||||||||||
| C | 286 (68.1) | 128(66.7) | 112(58.3) | 245 (60.0) | 1.00ref | 1.00ref | 1.00ref | |||
| T | 134 (31.9) | 64 (33.3) | 80 (41.7) | 163 (40.0) | 1.085 (0.720‐1.634) | .697 | 1.588 (1.102‐2.288) | .013 | 1.461 (1.091‐1.956) | .011 |
| Dominant model | ||||||||||
| CC | 98 (46.7) | 40 (41.7) | 36 (37.5) | 73 (35.8) | 1.00ref | 1.00ref | 1.00ref | |||
| CT + TT | 112 (53.3) | 56 (58.3) | 60 (62.5) | 131 (64.2) | 1.192 (0.683‐2.079) | .536 | 1.551 (0.930‐2.587) | .093 | 1.697 (1.130‐2.549) | .011 |
| Recessive model | ||||||||||
| CC + CT | 188 (89.4) | 88 (91.7) | 76 (79.2) | 172 (84.3) | 1.00ref | 1.00ref | 1.00ref | |||
| TT | 22 (10.4) | 8 (8.3) | 20 (20.8) | 32 (15.7) | 0.927(0.361‐2.381) | .874 | 2.304(1.162‐4.568) | .017 | 1.524 (0.844‐2.752) | .162 |
Abbreviations: CHB, chronic HBV; HC, healthy controls; HCC, hepatocellular carcinoma; LC, liver cirrhosis.
Stratified effects of CD44 polymorphisms on HCC risk estimated by sex
| Male | Female | |||||||
|---|---|---|---|---|---|---|---|---|
| HCC | HC | OR (95% CI) |
| HCC | HC | OR (95% CI) |
| |
| rs8193 | ||||||||
| CC | 53 | 51 | 11.00ref | 8 | 15 | 1.00ref | ||
| CT | 84 | 75 | 0.987 (0.594‐1.639) | .958 | 28 | 28 | 2.340 (0.802‐6.824) | .120 |
| TT | 28 | 27 | 0.988 (0.504‐1.936) | .973 | 3 | 14 | 0.616 (0.127‐2.985) | .547 |
| rs10836347 | ||||||||
| CC | 142 | 135 | 11.00ref | 31 | 51 | 1.00ref | ||
| CT | 23 | 18 | 1.168 (0.594‐2.299) | .652 | 8 | 6 | 2.100 (0.629‐7.017) | .228 |
| TT | 0 | 0 | NA | 0 | 0 | |||
| rs13347 | ||||||||
| CC | 63 | 71 | 11.00ref | 10 | 27 | 1.00ref | ||
| CT | 76 | 63 | 1.460 (0.892‐2.388) | .132 | 23 | 27 | 2.675 (1.004‐7.132) | .049 |
| TT | 26 | 19 | 1.635 (0.812‐3.292) | .169 | 6 | 3 | 5.992 (1.083‐33.164) | .040 |
Stratified effects of CD44 polymorphisms on HCC risk estimated by age
| Age <50 y | Age ≥50 y | |||||||
|---|---|---|---|---|---|---|---|---|
| HCC | HC | OR (95% CI) |
| HCC | HC | OR (95% CI) |
| |
| rs8193 | ||||||||
| CC | 29 | 40 | 11.00ref | 32 | 26 | 1.00ref | ||
| CT | 63 | 64 | 1.534 (0.820‐2.871) | .181 | 49 | 39 | 1.000 (0.510‐1.961) | 1.000 |
| TT | 17 | 25 | 1.104 (0.487‐2.501) | .813 | 14 | 16 | 0.730 (0.298‐1.789) | .491 |
| rs10836347 | ||||||||
| CC | 92 | 113 | 11.00ref | 81 | 73 | 1.00ref | ||
| CT | 17 | 16 | 1.395 (0.644‐3.022) | .398 | 14 | 8 | 1.678 (0.658‐4.283) | .279 |
| TT | 0 | 0 | NA | 0 | 0 | NA | ||
| rs13347 | ||||||||
| CC | 39 | 51 | 11.00ref | 34 | 47 | 1.00ref | ||
| CT | 55 | 63 | 1.143 (0.642‐2.038) | .649 | 44 | 27 | 2.157 (1.113‐4.181) | .023 |
| TT | 15 | 15 | 1.201 (0.507‐2.845) | .677 | 17 | 7 | 3.405 (1.263‐9.178) | .015 |
Stratified effects of CD44 polymorphisms on HCC risk estimated by smoking
| Smoker | Nonsmoker | |||||||
|---|---|---|---|---|---|---|---|---|
| HCC | HC | OR (95% CI) |
| HCC | HC | OR (95% CI) |
| |
| rs8193 | ||||||||
| CC | 21 | 19 | 11.00ref | 40 | 47 | 1.00ref | ||
| CT | 43 | 34 | 1.180 (0.529‐2.630) | .686 | 69 | 69 | 1.234 (0.708‐2.152) | .458 |
| TT | 9 | 11 | 0.814 (0.253‐2.621) | .730 | 22 | 30 | 0.961 (0.417‐1.962) | .914 |
| rs10836347 | ||||||||
| CC | 61 | 58 | 11.00ref | 112 | 128 | 1.00ref | ||
| CT | 12 | 6 | 2.135 (0.729‐6.259) | .167 | 19 | 18 | 1.141 (0.559‐2.327) | .718 |
| TT | 0 | 0 | NA | 0 | 0 | NA | ||
| rs13347 | ||||||||
| CC | 26 | 29 | 11.00ref | 47 | 69 | 1.00ref | ||
| CT | 35 | 28 | 1.606 (0.746‐3.457) | .225 | 64 | 62 | 1.659 (0.975‐2.822) | .062 |
| TT | 12 | 7 | 2.071 (0.684‐6.269) | .198 | 20 | 15 | 1.947 (0.887‐4.275) | .097 |
Stratified effects of CD44 polymorphisms on HCC risk estimated by alcohol consumption
| Drinker | Nondrinker | |||||||
|---|---|---|---|---|---|---|---|---|
| HCC | HC | OR (95% CI) |
| HCC | HC | OR (95% CI) |
| |
| rs8193 | ||||||||
| CC | 21 | 16 | 11.00ref | 40 | 50 | 1.00ref | ||
| CT | 45 | 29 | 1.387 (0.592‐3.246) | .451 | 67 | 74 | 1.153 (0.668‐1.989) | .609 |
| TT | 13 | 11 | 1.219 (0.397‐3.736) | .730 | 18 | 30 | 0.844 (0.404‐1.763) | .653 |
| rs10836347 | ||||||||
| CC | 63 | 53 | 11.00ref | 110 | 133 | 1.00ref | ||
| CT | 16 | 3 | 4.552 (1.205‐17.192) | .025 | 15 | 21 | 0.835 (0.406‐1.719) | .625 |
| TT | 0 | 0 | NA | 0 | 0 | NA | ||
| rs13347 | ||||||||
| CC | 28 | 28 | 11.00ref | 45 | 70 | 1.00ref | ||
| CT | 36 | 24 | 1.710 (0.782‐3.741) | .179 | 63 | 66 | 1.590 (0.939‐2.690) | .084 |
| TT | 15 | 4 | 4.549 (1.244‐16.635) | .022 | 17 | 18 | 1.497 (0.689‐3.253) | .308 |
Haplotype frequencies of CD44 polymorphisms
| Haplotypes | Case (2n = 404, %) | Controls (2n = 420, %) |
| OR | 95% CI |
|---|---|---|---|---|---|
| CCC | 130 (0.320) | 145 (0.346) | .534 | 0.911 | 0.678‐1.223 |
| CCT | 91 (0.222) | 73 (0.174) | .057 | 1.399 | 0.989‐1.979 |
| TCC | 97 (0.238) | 125 (0.279) | .080 | 0.756 | 0.553‐1.035 |
| TCT | 59 (0.144) | 53 (0.126) | .374 | 1.200 | 0.803‐1.793 |