Literature DB >> 31297617

Automated framework for accurate segmentation of leaf images for plant health assessment.

Mohammed Ghazal1,2, Ali Mahmoud3, Ahmed Shalaby3, Ayman El-Baz3.   

Abstract

Leaf segmentation is significantly important in assisting ecologists to automatically detect symptoms of disease and other stressors affecting trees. This paper employs state-of-the-art techniques in image processing to introduce an accurate framework for segmenting leaves and diseased leaf spots from images. The proposed framework integrates an appearance model that visually represents the current input image with the color prior information generated from RGB color images that were formerly saved in our database. Our framework consists of four main steps: (1) Enhancing the accuracy of the segmentation at minimum time by making use of contrast changes to automatically identify the region of interest (ROI) of the entire leaf, where the pixel-wise intensity relations are described by an electric field energy model. (2) Modeling the visual appearance of the input image using a linear combination of discrete Gaussians (LCDG) to predict the marginal probability distributions of the grayscale ROI main three classes. (3) Calculating the pixel-wise probabilities of these three classes for the color ROI based on the color prior information of database images that are segmented manually, where the current and prior pixel-wise probabilities are used to find the initial labels. (4) Refining the labels with the generalized Gauss-Markov random field model (GGMRF), which maintains the continuity. The proposed segmentation approach was applied to the leaves of mangrove trees in Abu Dhabi in the United Arab Emirates. Experimental validation showed high accuracy, with a Dice similarity coefficient 90% for distinguishing leaf spot from healthy leaf area.

Keywords:  Environmental monitoring; Image processing; LCDG; Leaf area; Mangrove; Non-destructive; Plant health; Segmentation

Mesh:

Year:  2019        PMID: 31297617     DOI: 10.1007/s10661-019-7615-9

Source DB:  PubMed          Journal:  Environ Monit Assess        ISSN: 0167-6369            Impact factor:   2.513


  8 in total

1.  Precise segmentation of 3-D magnetic resonance angiography.

Authors:  Ayman El-Baz; Ahmed Elnakib; Fahmi Khalifa; Mohamed Abou El-Ghar; Patrick McClure; Ahmed Soliman; Georgy Gimel'farb
Journal:  IEEE Trans Biomed Eng       Date:  2012-04-25       Impact factor: 4.538

2.  A generalized Gaussian image model for edge-preserving MAP estimation.

Authors:  C Bouman; K Sauer
Journal:  IEEE Trans Image Process       Date:  1993       Impact factor: 10.856

3.  Paired regions for shadow detection and removal.

Authors:  Ruiqi Guo; Qieyun Dai; Derek Hoiem
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2013-12       Impact factor: 6.226

4.  Leaf Doctor: A New Portable Application for Quantifying Plant Disease Severity.

Authors:  Sarah J Pethybridge; Scot C Nelson
Journal:  Plant Dis       Date:  2015-08-14       Impact factor: 4.438

5.  Statistical validation of image segmentation quality based on a spatial overlap index.

Authors:  Kelly H Zou; Simon K Warfield; Aditya Bharatha; Clare M C Tempany; Michael R Kaus; Steven J Haker; William M Wells; Ferenc A Jolesz; Ron Kikinis
Journal:  Acad Radiol       Date:  2004-02       Impact factor: 3.173

6.  The loss of species: mangrove extinction risk and geographic areas of global concern.

Authors:  Beth A Polidoro; Kent E Carpenter; Lorna Collins; Norman C Duke; Aaron M Ellison; Joanna C Ellison; Elizabeth J Farnsworth; Edwino S Fernando; Kandasamy Kathiresan; Nico E Koedam; Suzanne R Livingstone; Toyohiko Miyagi; Gregg E Moore; Vien Ngoc Nam; Jin Eong Ong; Jurgenne H Primavera; Severino G Salmo; Jonnell C Sanciangco; Sukristijono Sukardjo; Yamin Wang; Jean Wan Hong Yong
Journal:  PLoS One       Date:  2010-04-08       Impact factor: 3.240

7.  Automated framework for accurate segmentation of pressure ulcer images.

Authors:  Begonya Garcia-Zapirain; Ahmed Shalaby; Ayman El-Baz; Adel Elmaghraby
Journal:  Comput Biol Med       Date:  2017-09-22       Impact factor: 4.589

8.  Evaluating the condition of a mangrove forest of the Mexican Pacific based on an estimated leaf area index mapping approach.

Authors:  J M Kovacs; J M L King; F Flores de Santiago; F Flores-Verdugo
Journal:  Environ Monit Assess       Date:  2008-11-21       Impact factor: 2.513

  8 in total
  1 in total

1.  LeafScope: A Portable High-Resolution Multispectral Imager for In Vivo Imaging Soybean Leaf.

Authors:  Liangju Wang; Yunhong Duan; Libo Zhang; Jialei Wang; Yikai Li; Jian Jin
Journal:  Sensors (Basel)       Date:  2020-04-13       Impact factor: 3.576

  1 in total

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