Literature DB >> 22547453

Precise segmentation of 3-D magnetic resonance angiography.

Ayman El-Baz1, Ahmed Elnakib, Fahmi Khalifa, Mohamed Abou El-Ghar, Patrick McClure, Ahmed Soliman, Georgy Gimel'farb.   

Abstract

Accurate automatic extraction of a 3-D cerebrovascular system from images obtained by time-of-flight (TOF) or phase contrast (PC) magnetic resonance angiography (MRA) is a challenging segmentation problem due to the small size objects of interest (blood vessels) in each 2-D MRA slice and complex surrounding anatomical structures (e.g., fat, bones, or gray and white brain matter). We show that due to the multimodal nature of MRA data, blood vessels can be accurately separated from the background in each slice using a voxel-wise classification based on precisely identified probability models of voxel intensities. To identify the models, an empirical marginal probability distribution of intensities is closely approximated with a linear combination of discrete Gaussians (LCDG) with alternate signs, using our previous EM-based techniques for precise linear combination of Gaussian-approximation adapted to deal with the LCDGs. The high accuracy of the proposed approach is experimentally validated on 85 real MRA datasets (50 TOF and 35 PC) as well as on synthetic MRA data for special 3-D geometrical phantoms of known shapes.

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Year:  2012        PMID: 22547453     DOI: 10.1109/TBME.2012.2196434

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  10 in total

1.  Computer-aided diagnosis systems for lung cancer: challenges and methodologies.

Authors:  Ayman El-Baz; Garth M Beache; Georgy Gimel'farb; Kenji Suzuki; Kazunori Okada; Ahmed Elnakib; Ahmed Soliman; Behnoush Abdollahi
Journal:  Int J Biomed Imaging       Date:  2013-01-29

2.  Automated framework for accurate segmentation of leaf images for plant health assessment.

Authors:  Mohammed Ghazal; Ali Mahmoud; Ahmed Shalaby; Ayman El-Baz
Journal:  Environ Monit Assess       Date:  2019-07-12       Impact factor: 2.513

3.  Classification of pressure ulcer tissues with 3D convolutional neural network.

Authors:  Begoña García-Zapirain; Mohammed Elmogy; Ayman El-Baz; Adel S Elmaghraby
Journal:  Med Biol Eng Comput       Date:  2018-06-15       Impact factor: 2.602

4.  Algorithms for segmenting cerebral time-of-flight magnetic resonance angiograms from volunteers and anemic patients.

Authors:  Alexander Saunders; Kevin S King; Stefan Blüml; John C Wood; Matthew Borzage
Journal:  J Med Imaging (Bellingham)       Date:  2021-04-28

5.  Interactive 3D Analysis of Blood Vessel Trees and Collateral Vessel Volumes in Magnetic Resonance Angiograms in the Mouse Ischemic Hindlimb Model.

Authors:  Peter C Marks; Marilena Preda; Terry Henderson; Lucy Liaw; Volkhard Lindner; Robert E Friesel; Ilka M Pinz
Journal:  Open Med Imaging J       Date:  2013-10-31

6.  A fast stochastic framework for automatic MR brain images segmentation.

Authors:  Marwa Ismail; Ahmed Soliman; Mohammed Ghazal; Andrew E Switala; Georgy Gimel'farb; Gregory N Barnes; Ashraf Khalil; Ayman El-Baz
Journal:  PLoS One       Date:  2017-11-14       Impact factor: 3.240

7.  Quantitative Analysis of the Cerebral Vasculature on Magnetic Resonance Angiography.

Authors:  Pulak Goswami; Mia K Markey; Steven J Warach; Adrienne N Dula
Journal:  Sci Rep       Date:  2020-06-23       Impact factor: 4.379

8.  A Novel Framework for Early Detection of Hypertension using Magnetic Resonance Angiography.

Authors:  Heba Kandil; Ahmed Soliman; Mohammed Ghazal; Ali Mahmoud; Ahmed Shalaby; Robert Keynton; Adel Elmaghraby; Guruprasad Giridharan; Ayman El-Baz
Journal:  Sci Rep       Date:  2019-07-31       Impact factor: 4.379

9.  3D kidney segmentation from abdominal diffusion MRI using an appearance-guided deformable boundary.

Authors:  Mohamed Shehata; Ali Mahmoud; Ahmed Soliman; Fahmi Khalifa; Mohammed Ghazal; Mohamed Abou El-Ghar; Moumen El-Melegy; Ayman El-Baz
Journal:  PLoS One       Date:  2018-07-13       Impact factor: 3.240

10.  A novel computer-aided diagnosis system for the early detection of hypertension based on cerebrovascular alterations.

Authors:  Heba Kandil; Ahmed Soliman; Fatma Taher; Mohammed Ghazal; Ashraf Khalil; Guruprasad Giridharan; Robert Keynton; J Richard Jennings; Ayman El-Baz
Journal:  Neuroimage Clin       Date:  2019-12-02       Impact factor: 4.881

  10 in total

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